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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Error while merging channels command"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1191">1191</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Error while merging channels command
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>carlijn.vandewater1@radboudumc.nl
</td>
</tr>
<tr>
<th>CC</th>
<td>carlijn.vandewater1@radboudumc.nl
</td>
</tr></table>
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<pre>Hello,
I've imported two image sequences of both 212 images (.tif files). When I try
to merge these image stacks I get the following error. The folder I'm importing
from only contain 212 images and no other filetypes. I' ve also imported only
50 of these images and still got the same error.
Error:
(Fiji Is Just) ImageJ 2.0.0-rc-41/1.50b; Java 1.6.0_24 [64-bit]; Windows 7 6.1;
154MB of 12245MB (1%)
java.lang.StringIndexOutOfBoundsException: String index out of range: -1
at java.lang.String.substring(String.java:1937)
at java.lang.String.substring(String.java:1904)
at ij.plugin.RGBStackMerge.getName(RGBStackMerge.java:234)
at ij.plugin.RGBStackMerge.getInitialNames(RGBStackMerge.java:221)
at ij.plugin.RGBStackMerge.mergeStacks(RGBStackMerge.java:46)
at ij.plugin.RGBStackMerge.run(RGBStackMerge.java:24)
at ij.IJ.runPlugIn(IJ.java:182)
at ij.Executer.runCommand(Executer.java:132)
at ij.Executer.run(Executer.java:62)
at java.lang.Thread.run(Thread.java:662)
Recorded macro (eventhough I just opened them via the Fiji menu
File>Import>Image Sequence):
run("Image Sequence...",
"open=[D:\\20151113_OKO\\13112015_Fucci_treatments\\E98-Fucci sort control
washed GFP\\C2\\Img0001.tif] sort");
run("Image Sequence...",
"open=[D:\\20151113_OKO\\13112015_Fucci_treatments\\E98-Fucci sort control
washed RFP\\C1\\Img0001.tif] sort");
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: CHECK_TURNED_OFF
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
C:\Users\z931157\DOWNLO~1\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24//jre
imagej.dir => C:\Users\z931157\DOWNLO~1\FIJI-W~1\Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20151017033411)
Fiji: <a href="http://update.fiji.sc/">http://update.fiji.sc/</a> (last check:20151017042838)
BioVoxxel: <a href="http://sites.imagej.net/BioVoxxel/">http://sites.imagej.net/BioVoxxel/</a> (last check:20151016184842)
Files not up-to-date:
945b6a66 (LOCAL_ONLY) 20151109095140 luts/FociPicker_256Colors.lut
db71a076 (LOCAL_ONLY) 20130130061123 macros/IHC_Profiler.txt
0a5c1981 (LOCAL_ONLY) 20150701121127 plugins/Color_Profiler.jar
1617f9d1 (LOCAL_ONLY) 20151109095047
plugins/Foci_Picker3D$PixelCollection3D.class
4f03b5a2 (LOCAL_ONLY) 20151109095036 plugins/Foci_Picker3D.class
833ba9a6 (LOCAL_ONLY) 20130730092737 plugins/IHC Profiler/IHC_Profiler.class
be4ffb9b (LOCAL_ONLY) 20130130061123 plugins/IHC_Profiler.txt
3c21996d (LOCAL_ONLY) 20150511092636 plugins/RGBtoLab_.class
9e5984f3 (LOCAL_ONLY) 20060502092450 plugins/RGBtoYUV_.class
844d1f78 (OBSOLETE_MODIFIED) 20150511093310 plugins/Threshold_Colour.jar</pre>
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