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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - area measurement of Thresholded image"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1177">1177</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>area measurement of Thresholded image
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>pia.nyeng@sund.ku.dk
</td>
</tr>
<tr>
<th>CC</th>
<td>pia.nyeng@sund.ku.dk
</td>
</tr></table>
<p>
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<pre>Erratic minThr for measurements on thresholded image:
-"Set measurements" setup in advance: area limit display add redirect=None
decimal=0
-Results measurements: MinThr=255 (correct) sometimes, but most of the time
MinThr=0 (gives wrong area meas)
Macro:
run("Auto Threshold", "method=Yen white");
//or any other method
run("Measure");
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: C:\Users\qkn766\Fiji.app/java/win64/jdk1.6.0_24//jre
imagej.dir => C:\Users\qkn766\Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150624045330)
Fiji: <a href="http://update.fiji.sc/">http://update.fiji.sc/</a> (last check:20150623171529)
Files not up-to-date:
86f03f50 (MODIFIED) 20151016113204 jars/ij-1.49v.jar
62871d98 (MODIFIED) 20150625093845 jars/imagej-common-0.15.1.jar
e99da67f (MODIFIED) 20151016113121 jars/imagej-common-0.18.0.jar
5bb1165d (LOCAL_ONLY) 20151016113127 jars/imagej-deprecated-0.1.0.jar
a755edd2 (MODIFIED) 20150625093852 jars/imagej-ops-0.14.0.jar
257130fa (MODIFIED) 20151016113123 jars/imagej-ops-0.20.0.jar
4ccabde3 (MODIFIED) 20150625093852 jars/imagej-updater-0.7.5.jar
8362c815 (MODIFIED) 20151016113123 jars/imagej-updater-0.7.7.jar
8f38c671 (MODIFIED) 20150625093839 jars/imglib2-2.3.0.jar
2b12ee6e (MODIFIED) 20151016113119 jars/imglib2-2.4.0.jar
f40d9299 (MODIFIED) 20150625093856 jars/imglib2-algorithm-0.3.0.jar
08ff7b1f (MODIFIED) 20151016113126 jars/imglib2-algorithm-0.3.1.jar
3be36100 (MODIFIED) 20150625093853 jars/imglib2-roi-0.3.1.jar
2dc68041 (MODIFIED) 20151016113125 jars/imglib2-roi-0.3.2.jar
1ad3be0d (LOCAL_ONLY) 20140522115512 jars/jpedalSTD.jar
d939c993 (MODIFIED) 20150625093842 jars/scijava-common-2.43.0.jar
72732fac (MODIFIED) 20151016113120 jars/scijava-common-2.46.0.jar
b2afde18 (LOCAL_ONLY) 20150112120429 plugins/cell_counter.jar</pre>
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