<html>
<head>
<base href="http://fiji.sc/bugzilla/" />
</head>
<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Bio-Formats extensions cause exception in macro"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1176">1176</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Bio-Formats extensions cause exception in macro
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>jan.brocher@biovoxxel.de
</td>
</tr>
<tr>
<th>CC</th>
<td>jan.brocher@biovoxxel.de
</td>
</tr></table>
<p>
<div>
<pre>Using the following code in a macro causes an exception as soon as the first
Ext.-command is called.
//---------macro code -------------
run("Bio-Formats Macro Extensions");
filePath = File.openDialog("Choose a file");
Ext.setId(filePath);
Ext.getSeriesCount(seriesCount);
//---------------------------------
Happens in Fiji with IJ 2.0.0-rc39/1.50b as well as with the last life-line
version of Fiji with IJ 2.0.0-rc23/1.49m.
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: CHECK_TURNED_OFF
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: D:\Fiji\FIJI~3.APP/java/win64/jdk1.6.0_24//jre
imagej.dir => D:\Fiji\FIJI~3.APP
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150915154157)
Fiji: <a href="http://update.fiji.sc/">http://update.fiji.sc/</a> (last check:20151013215820)
3D ImageJ Suite: <a href="http://sites.imagej.net/Tboudier/">http://sites.imagej.net/Tboudier/</a> (last check:20151008085610)
Bio-Formats: <a href="http://sites.imagej.net/Bio-Formats/">http://sites.imagej.net/Bio-Formats/</a> (last check:20151013032647)
Biomedgroup: <a href="http://sites.imagej.net/Biomedgroup/">http://sites.imagej.net/Biomedgroup/</a> (last check:20150921121108)
BioVoxxel: <a href="http://sites.imagej.net/BioVoxxel/">http://sites.imagej.net/BioVoxxel/</a> (last check:20150930090759)
IBMP-CNRS: <a href="http://sites.imagej.net/Mutterer/">http://sites.imagej.net/Mutterer/</a> (last check:20150917122224)
Morphology: <a href="http://sites.imagej.net/Landini/">http://sites.imagej.net/Landini/</a> (last check:20140723165558)
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23f213f1 (LOCAL_ONLY) 20150521124808 plugins/ijblob-1.3.jar</pre>
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