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<head>
<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Wrong metadata for Leica lif files"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1173">1173</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Wrong metadata for Leica lif files
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>lingfengtang1982@gmail.com
</td>
</tr>
<tr>
<th>CC</th>
<td>lingfengtang1982@gmail.com
</td>
</tr></table>
<p>
<div>
<pre>Hi, we have a Leica SP8 confocal. I am doing timelapse imaging, and converted
the lif file to tiff files. Since the file is huge, we don't want to keep the
original lif file. However, if I save the metadata file created by FiJi or
FiJi2, it missed some important information, for exampke, the laser I used were
488 and 561 nm, but it only shows 633nm which I didn't use. Did anybody else
also report the same problem? Is there any way that can solve this problem?
Thank you in advance, and thank you so much for developing the tools!
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: UP_TO_DATE
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: C:\Fiji.app/java/win64/jdk1.6.0_24//jre
imagej.dir => C:\Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150915094157)
Fiji: <a href="http://update.fiji.sc/">http://update.fiji.sc/</a> (last check:20151008165731)
Files not up-to-date:
c3f8675e (OBSOLETE_UNINSTALLED) 20130314130444 jars/Jama.jar
cd9b718a (OBSOLETE_UNINSTALLED) 20130314130444
jars/bio-formats-4.5-SNAPSHOT.jar
216b5903 (OBSOLETE_UNINSTALLED) 20130314130444 jars/commons-math.jar
b6bf3817 (OBSOLETE_UNINSTALLED) 20130314130444 jars/edu_mines_jtk.jar
491e89c0 (OBSOLETE_UNINSTALLED) 20130314130444 jars/forms-1.2.1.jar
d0b71d6c (OBSOLETE_UNINSTALLED) 20130314130444 jars/ij-app-2.0.0-SNAPSHOT.jar
238f8b7f (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-commands-app-2.0.0-SNAPSHOT.jar
30bafe05 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-commands-data-2.0.0-SNAPSHOT.jar
c4eccba5 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-commands-debug-2.0.0-SNAPSHOT.jar
8dee1e17 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-commands-display-2.0.0-SNAPSHOT.jar
0433ba93 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-commands-misc-2.0.0-SNAPSHOT.jar
736bdcd6 (OBSOLETE_UNINSTALLED) 20130314130444 jars/ij-core-2.0.0-beta4.jar
49fe6bf4 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-data-2.0.0-SNAPSHOT.jar
f511e0ad (OBSOLETE_UNINSTALLED) 20130314130444 jars/ij-io-2.0.0-SNAPSHOT.jar
c1965743 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-launcher-2.0.0-SNAPSHOT.jar
aa2bdf43 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-legacy-2.0.0-SNAPSHOT.jar
c41eef88 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-minimaven-2.0.0-SNAPSHOT.jar
a558870c (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-options-2.0.0-SNAPSHOT.jar
45bce175 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-platforms-2.0.0-SNAPSHOT.jar
2d9491a4 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-script-beanshell-2.0.0-SNAPSHOT.jar
fc08bce0 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-script-java-2.0.0-SNAPSHOT.jar
79283be4 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-tools-2.0.0-SNAPSHOT.jar
db62285a (OBSOLETE_UNINSTALLED) 20130314130444 jars/ij-ui-2.0.0-SNAPSHOT.jar
1dfc974b (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-ui-common-awt-2.0.0-SNAPSHOT.jar
79bc7629 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-ui-swing-2.0.0-SNAPSHOT.jar
55eb9be9 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-ui-swing-commands-2.0.0-SNAPSHOT.jar
e10e66d9 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-ui-swing-script-editor-2.0.0-SNAPSHOT.jar
3f54d480 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-ui-swing-tools-2.0.0-SNAPSHOT.jar
363190db (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar
946a6a1e (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-updater-core-2.0.0-SNAPSHOT.jar
89cd2f5c (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
7010d5c5 (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-util-awt-2.0.0-SNAPSHOT.jar
8874a0bd (OBSOLETE_UNINSTALLED) 20130314130444
jars/ij-util-swing-2.0.0-SNAPSHOT.jar
ae19308b (OBSOLETE_UNINSTALLED) 20130314130444
jars/imglib-algorithms-2.0.0-SNAPSHOT.jar
fc48b04a (OBSOLETE_UNINSTALLED) 20130314130444 jars/imglib-ij.jar
08453207 (OBSOLETE_UNINSTALLED) 20130314130444 jars/imglib-io.jar
cacbad88 (OBSOLETE_UNINSTALLED) 20130314130444 jars/imglib-scripting.jar
d0560c65 (OBSOLETE_UNINSTALLED) 20130314130444 jars/imglib.jar
29d38d70 (OBSOLETE_UNINSTALLED) 20130314130444
jars/imglib2-algorithms-2.0.0-SNAPSHOT.jar
71ed8974 (OBSOLETE_UNINSTALLED) 20130314130444
jars/imglib2-algorithms-gpl-2.0.0-SNAPSHOT.jar
7e422c9d (OBSOLETE_UNINSTALLED) 20130314130444
jars/imglib2-algorithms-legacy-2.0.0-SNAPSHOT.jar
f6b42884 (OBSOLETE_UNINSTALLED) 20130314130444
jars/imglib2-io-2.0.0-SNAPSHOT.jar
59503e06 (OBSOLETE_UNINSTALLED) 20130314130444
jars/imglib2-ops-2.0.0-SNAPSHOT.jar
8c636e50 (OBSOLETE_UNINSTALLED) 20130314130444 jars/jai_codec.jar
717dd8e0 (OBSOLETE_UNINSTALLED) 20130314130444 jars/jai_core.jar
f7795ac4 (OBSOLETE_UNINSTALLED) 20130314130444
jars/jai_imageio-4.5-SNAPSHOT.jar
c295a4c5 (OBSOLETE_UNINSTALLED) 20130314130446 jars/jdom-2.0.2.jar
64241209 (OBSOLETE_UNINSTALLED) 20130314130446 jars/jdom-contrib.jar
1ad3be0d (LOCAL_ONLY) 20130314130446 jars/jpedalSTD.jar
da499a7d (OBSOLETE_UNINSTALLED) 20130314130446 jars/jruby.jar
24d47d70 (OBSOLETE_UNINSTALLED) 20130314130446 jars/junit-4.8.1.jar
f5968a72 (OBSOLETE_UNINSTALLED) 20130314130446 jars/jython.jar
c1bff11d (OBSOLETE_UNINSTALLED) 20130314130446
jars/loci-legacy-4.5-SNAPSHOT.jar
8dd17a33 (OBSOLETE_UNINSTALLED) 20130314130446 jars/lwf-stubs-4.4.5.jar
725c4d13 (OBSOLETE_UNINSTALLED) 20130314130446
jars/mdbtools-java-4.5-SNAPSHOT.jar
2d334013 (OBSOLETE_UNINSTALLED) 20130314130446 jars/metakit-4.4.4.jar
8b4b4a32 (OBSOLETE_UNINSTALLED) 20130314130446 jars/netcdf-java-4.0.03.jar
63799256 (OBSOLETE_UNINSTALLED) 20130314130446 jars/ome-xml-4.5-SNAPSHOT.jar
9e5ef6ac (OBSOLETE_UNINSTALLED) 20130314130446 jars/poi-loci-4.5-SNAPSHOT.jar
6ac949b5 (OBSOLETE_UNINSTALLED) 20130314130446
jars/scifio-devel-4.5-SNAPSHOT.jar
eedc0cd9 (OBSOLETE_UNINSTALLED) 20130314130446 jars/serializer-2.7.1.jar
4778f122 (OBSOLETE_UNINSTALLED) 20130314130446 jars/sezpoz-1.9.jar
1b71cda4 (OBSOLETE_UNINSTALLED) 20130314130446 jars/slf4j-log4j12-1.5.10.jar
f90e2a3f (OBSOLETE_UNINSTALLED) 20130314130448 jars/weka.jar
36cdef55 (OBSOLETE_UNINSTALLED) 20130314130448 jars/xalan-2.7.1.jar
334b990c (LOCAL_ONLY) 20131215150406 macros/Elastic 2D Image Registration.txt
3481aef4 (LOCAL_ONLY) 20150824125404 macros/StartupMacros.txt
4c69fe59 (LOCAL_ONLY) 20150707002817 plugins/Hello world.txt
718b5a6a (LOCAL_ONLY) 20150812145911 plugins/LT-Batch z projection.ijm
5c8a75f8 (LOCAL_ONLY) 20150812145911 plugins/Macros/LT-Batch z projection.ijm
24e11881 (LOCAL_ONLY) 20150812142740 plugins/Macros/LT-Batch z projection.txt
2fb500f0 (LOCAL_ONLY) 20100629190412 plugins/QuickTime_Plugins.jar
46cc7ddc (LOCAL_ONLY) 20130315025108 plugins/SaveAsMovie_win64.jar
6e196872 (OBSOLETE_UNINSTALLED) 20130314130442 plugins/Script_Editor.jar
e984a5e3 (OBSOLETE_UNINSTALLED) 20130314130442 plugins/Threshold_Colour.jar
00d269f7 (OBSOLETE_UNINSTALLED) 20130314130444
plugins/loci_plugins-4.5-SNAPSHOT.jar
569c5489 (LOCAL_ONLY) 20141121141500 plugins/mcib3d-suite/mcib3d-core3.0.jar
1979e4e6 (LOCAL_ONLY) 20141121154754
plugins/mcib3d-suite/mcib3d_plugins3.0.jar
8cb8d89b (LOCAL_ONLY) 20120924231500 plugins/mcib3d-suite/quickhull3d.jar</pre>
</div>
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