<html>
<head>
<base href="http://fiji.sc/bugzilla/" />
</head>
<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Bug in Analyze Skeleton (2D/3D)"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1164">1164</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Bug in Analyze Skeleton (2D/3D)
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>eine.anonyme.mail@gmail.com
</td>
</tr>
<tr>
<th>CC</th>
<td>eine.anonyme.mail@gmail.com
</td>
</tr></table>
<p>
<div>
<pre>Dear all,
when skeletonizing images it can happen that the skeletons are only 1px. I
think that the spx and spy values in the Results are not correct. I can´t
comment on spy, since I only have 2D data.
The following macro illustrates this.
e.g. spx and spy values in row 4 and 4 are identical.
run("Blobs (25K)");
run("Make Binary");
run("Skeletonize (2D/3D)");
run("Analyze Skeleton (2D/3D)", "prune=none calculate show");
selectWindow("Results");
Best,
Martin
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
C:\Users\martin\Desktop\FIJI~1.APP/java/win64/jdk1.6.0_24//jre
imagej.dir => C:\Users\martin\Desktop\FIJI~1.APP
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150915154157)
Fiji: <a href="http://update.fiji.sc/">http://update.fiji.sc/</a> (last check:20150922183051)
3D ImageJ Suite: <a href="http://sites.imagej.net/Tboudier/">http://sites.imagej.net/Tboudier/</a> (last check:20150914070333)
BAR: <a href="http://sites.imagej.net/Tiago/">http://sites.imagej.net/Tiago/</a> (last check:20150923203109)
Biomedgroup: <a href="http://sites.imagej.net/Biomedgroup/">http://sites.imagej.net/Biomedgroup/</a> (last check:20150921121108)
BioVoxxel: <a href="http://sites.imagej.net/BioVoxxel/">http://sites.imagej.net/BioVoxxel/</a> (last check:20150819111801)
Cookbook: <a href="http://sites.imagej.net/Cookbook/">http://sites.imagej.net/Cookbook/</a> (last check:20150302230629)
CMCI-EMBL: <a href="http://sites.imagej.net/Miura/">http://sites.imagej.net/Miura/</a> (last check:20150828112959)
MiToBo: <a href="http://sites.imagej.net/MiToBo/">http://sites.imagej.net/MiToBo/</a> (last check:20150617181533)
MOSAIC ToolSuite:
<a href="http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/">http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/</a> (last
check:20150831162554)
PHANTAST: <a href="http://sites.imagej.net/Nicjac/">http://sites.imagej.net/Nicjac/</a> (last check:20141204185001)
ScientiFig: <a href="http://sites.imagej.net/Aigouy/">http://sites.imagej.net/Aigouy/</a> (last check:20150820172346)
Files not up-to-date:
1ad3be0d (LOCAL_ONLY) 20140309044642 jars/jpedalSTD.jar
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5c7af901 (LOCAL_ONLY) 20130625111729 macros/toolsets/ROI Manager Tools.txt
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1d36a2a2 (LOCAL_ONLY) 20150331095453 plugins/Barnhill_IJ_Toolkit.jar
077159f3 (LOCAL_ONLY) 20150820111033 plugins/Image_Stabilizer.class
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Macros/_classify-with-weka_v05.ijm
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Macros/_claudia_montage_v02.ijm
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111ca2ac (LOCAL_ONLY) 20141128170415 plugins/tsp050706.ijm</pre>
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