<html>
<head>
<base href="http://fiji.sc/bugzilla/" />
</head>
<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - CoverMaker plugin is not working"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1155">1155</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>CoverMaker plugin is not working
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
<tr>
<th>OS</th>
<td>Mac OS
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>tomancak@mpi-cbg.de
</td>
</tr>
<tr>
<th>CC</th>
<td>tomancak@mpi-cbg.de
</td>
</tr></table>
<p>
<div>
<pre>Something wrong with inlining Java code in Jython.
Any ideas?
Thanks a lot
PAvel
(Fiji Is Just) ImageJ 2.0.0-rc-34/1.50a; Java 1.8.0_31 [64-bit]; Mac OS X
10.8.5; 309MB of 7958MB (3%)
java.lang.ClassNotFoundException: weave.gen1
at java.net.URLClassLoader$1.run(URLClassLoader.java:372)
at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:360)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at fiji.scripting.Weaver.inline(Weaver.java:185)
at fiji.scripting.Weaver.inline(Weaver.java:93)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
at
org.python.core.PyReflectedFunction.__call__(PyReflectedFunction.java:186)
at
org.python.core.PyReflectedFunction.__call__(PyReflectedFunction.java:204)
at org.python.core.PyObject.__call__(PyObject.java:404)
at org.python.core.PyObject.__call__(PyObject.java:408)
at
org.python.pycode._pyx0.Inline$3(/Applications/Fiji.app/plugins/Examples/CoverMaker/Cover_Maker.py:48)
at
org.python.pycode._pyx0.call_function(/Applications/Fiji.app/plugins/Examples/CoverMaker/Cover_Maker.py)
at org.python.core.PyTableCode.call(PyTableCode.java:165)
at org.python.core.PyBaseCode.call(PyBaseCode.java:134)
at org.python.core.PyFunction.__call__(PyFunction.java:317)
at
org.python.pycode._pyx0.CreateCover$4(/Applications/Fiji.app/plugins/Examples/CoverMaker/Cover_Maker.py:140)
at
org.python.pycode._pyx0.call_function(/Applications/Fiji.app/plugins/Examples/CoverMaker/Cover_Maker.py)
at org.python.core.PyTableCode.call(PyTableCode.java:165)
at org.python.core.PyBaseCode.call(PyBaseCode.java:184)
at org.python.core.PyFunction.__call__(PyFunction.java:350)
at
org.python.pycode._pyx0.f$0(/Applications/Fiji.app/plugins/Examples/CoverMaker/Cover_Maker.py:334)
at
org.python.pycode._pyx0.call_function(/Applications/Fiji.app/plugins/Examples/CoverMaker/Cover_Maker.py)
at org.python.core.PyTableCode.call(PyTableCode.java:165)
at org.python.core.PyCode.call(PyCode.java:18)
at org.python.core.Py.runCode(Py.java:1275)
at
org.scijava.plugins.scripting.jython.JythonScriptEngine.eval(JythonScriptEngine.java:76)
at org.scijava.script.ScriptModule.run(ScriptModule.java:174)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
at
org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:191)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
/Users/tomancak/Desktop/Desktop_2015/CoverMaker//12_9.tif
26,22
binding is: class org.python.core.PyList
Traceback (most recent call last):
File "/Applications/Fiji.app/plugins/Examples/CoverMaker/Cover_Maker.py",
line 327, in <module>
tileName, tileIndex, cols, rows = CreateCover(ip, tilewidth, tileheight,
dbpath)
File "/Applications/Fiji.app/plugins/Examples/CoverMaker/Cover_Maker.py",
line 98, in CreateCover
cruncher = Inline(arrays)
File "/Applications/Fiji.app/plugins/Examples/CoverMaker/Cover_Maker.py",
line 48, in Inline
return Weaver.inline(
at java.net.URLClassLoader$1.run(URLClassLoader.java:372)
at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:360)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at fiji.scripting.Weaver.inline(Weaver.java:185)
at fiji.scripting.Weaver.inline(Weaver.java:93)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:483)
java.lang.ClassNotFoundException: java.lang.ClassNotFoundException: weave.gen1
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.8.5
java.version => 1.8.0_31
java.vendor => Oracle Corporation
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.8.0_31-b13
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 25.31-b07
java.vm.vendor => Oracle Corporation
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.8
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: UPDATEABLE
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
/Library/Java/JavaVirtualMachines/jdk1.8.0_31.jdk/Contents/Home//jre
imagej.dir => /Applications/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150722105527)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20150725035809)
ClearVolume: <a href="http://sites.imagej.net/ClearVolume/">http://sites.imagej.net/ClearVolume/</a> (last check:20150703181607)
Files not up-to-date:
6dc91247 (MODIFIED) 20150302111630 Contents/Info.plist
01a6a964 (MODIFIED) 20150822172349 jars/bigdataviewer-core-1.2.1-SNAPSHOT.jar
970f9d47 (MODIFIED) 20150705201300 jars/bigdataviewer-core-1.2.1.jar
d294eed6 (LOCAL_ONLY) 20150804030405
jars/bigdataviewer-core-1.2.2.jar_backup.jar
279163cd (MODIFIED) 20150607165741
plugins/bigdataviewer_fiji-1.0.13-SNAPSHOT.jar
439ae281 (LOCAL_ONLY) 20150201153952 plugins/trackmate-1.0.0-SNAPSHOT.jar
143a7a00 (LOCAL_ONLY) 20150201153955 plugins/trove4j-3.0.3.jar</pre>
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