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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Runs slowly"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1143">1143</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Runs slowly
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
<tr>
<th>OS</th>
<td>Mac OS
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>djrowland@ucdavis.edu
</td>
</tr>
<tr>
<th>CC</th>
<td>djrowland@ucdavis.edu
</td>
</tr></table>
<p>
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<pre>Since a couple of updates ago, Fiji seems to run very slowly. Having a small
image set loaded, I noticed that scrolling through an image stack of about 22
slices, that there was a long lag time for the images to display. So there
essentially was no smooth scrolling the images whereas in previous versions it
was the case. I also created a macro to process DWI images in to ADC maps for
MRI data. This macro now runs extremely slowly and is painful to use.
I have read on the FIJI website that with the new updates there are issues with
Fiji and Java on MacOSX. I mainly use Mac and it is now mostly useless for my
purposes. If it would help I could upload data and the macro.
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.10.5
java.version => 1.7.0_51
java.vendor => Oracle Corporation
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.7.0_51-b13
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 24.51-b03
java.vm.vendor => Oracle Corporation
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.7
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
/Library/Java/JavaVirtualMachines/jdk1.7.0_51.jdk/Contents/Home//jre
imagej.dir => /Applications/Image Analysis/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150813121940)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20150814135156)
Files not up-to-date:
45e57df6 (LOCAL_ONLY) 20110603193126 plugins/BrukerOpener.jar
b060ccd8 (LOCAL_ONLY) 20020613170120 plugins/MRI_Analysis_Calculator.class
f9404e8b (LOCAL_ONLY) 20110603193502 plugins/MRI_t2_Calculator.class
3b062d6b (LOCAL_ONLY) 20020613170120 plugins/T1T2CurveFitter.class
9189a149 (LOCAL_ONLY) 20121115212418 plugins/nifti_io.jar</pre>
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