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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Reading CZI series image returns empty image while all the metadata are ok"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1139">1139</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Reading CZI series image returns empty image while all the metadata are ok
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
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<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>critical
</td>
</tr>
<tr>
<th>Priority</th>
<td>P5
</td>
</tr>
<tr>
<th>Component</th>
<td>Bio-Formats
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>sebrhode@googlemail.com
</td>
</tr></table>
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<div>
<pre>Created <span class=""><a href="attachment.cgi?id=255" name="attach_255" title="Empty thumbnails inside import dialog.">attachment 255</a> <a href="attachment.cgi?id=255&action=edit" title="Empty thumbnails inside import dialog.">[details]</a></span>
Empty thumbnails inside import dialog.
Hi,
I downloaded today's version of Fiji and tried to open a CZI series file via
BioFormats 5.1.3 (contains 8 series) as I did many time before. But when the
window opens, where one can select which series to open, all the thumbnails are
black (see screenshot).
The XML metadata see to be OK, but the resulting import image contains only
zeros. This used to work before without any problems and as far as I remember
it wasa even no problem with BF 5.1.3 some days ago...
The CZI image can be found here:
<a href="https://dl.dropboxusercontent.com/u/623476/Tiles1_CH%3D2_Z%3D3_T%3D2_B2_B4_SingleCZI.czi">https://dl.dropboxusercontent.com/u/623476/Tiles1_CH%3D2_Z%3D3_T%3D2_B2_B4_SingleCZI.czi</a>
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
c:\Users\Public\DOCUME~1\FIJI_2~1/java/win64/jdk1.6.0_24//jre
imagej.dir => c:\Users\Public\DOCUME~1\FIJI_2~1
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150722045527)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20150724215809)</pre>
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