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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Java 1.8_51 behavior"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1117">1117</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Java 1.8_51 behavior
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
<tr>
<th>OS</th>
<td>Mac OS
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>glenmac@uw.edu
</td>
</tr>
<tr>
<th>CC</th>
<td>glenmac@uw.edu
</td>
</tr></table>
<p>
<div>
<pre>Hello,
After installing Java 1.8_51 a couple of error messages began popping up. They
remained with a fresh install of Fiji, and after Fiji updates.
On startup, the Log window displays:
ReferenceError: "importPackage" is not defined in <eval> at line number 1
Using Bio-formats to open a 4-channel stack from OIF or OME formats will repeat
these lines 7 times in the Console window:
Warning: org.apache.xerces.jaxp.SAXParserImpl$JAXPSAXParser: Property
'<a href="http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit">http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit</a>' is not
recognized.
Warning: org.apache.xerces.parsers.SAXParser: Feature
'<a href="http://javax.xml.XMLConstants/feature/secure-processing">http://javax.xml.XMLConstants/feature/secure-processing</a>' is not recognized.
Warning: org.apache.xerces.parsers.SAXParser: Property
'<a href="http://javax.xml.XMLConstants/property/accessExternalDTD">http://javax.xml.XMLConstants/property/accessExternalDTD</a>' is not recognized.
Warning: org.apache.xerces.parsers.SAXParser: Property
'<a href="http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit">http://www.oracle.com/xml/jaxp/properties/entityExpansionLimit</a>' is not
recognized.
the files open and all metadata seems present.
Regards,
Glen
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.9.5
java.version => 1.8.0_51
java.vendor => Oracle Corporation
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.8.0_51-b16
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 25.51-b03
java.vm.vendor => Oracle Corporation
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.8
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: UP_TO_DATE
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
/Library/Java/JavaVirtualMachines/jdk1.8.0_51.jdk/Contents/Home//jre
imagej.dir => /Applications/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150715140840)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20150714092641)
3D ImageJ Suite: <a href="http://sites.imagej.net/Tboudier/">http://sites.imagej.net/Tboudier/</a> (last check:20150630212022)
BAR: <a href="http://sites.imagej.net/Tiago/">http://sites.imagej.net/Tiago/</a> (last check:20150604074025)
Bio-Formats: <a href="http://sites.imagej.net/Bio-Formats/">http://sites.imagej.net/Bio-Formats/</a> (last check:20150716182651)
BioVoxxel: <a href="http://sites.imagej.net/BioVoxxel/">http://sites.imagej.net/BioVoxxel/</a> (last check:20150702033207)
ClearVolume: <a href="http://sites.imagej.net/ClearVolume/">http://sites.imagej.net/ClearVolume/</a> (last check:20150703031607)
DiameterJ: <a href="http://sites.imagej.net/DiameterJ/">http://sites.imagej.net/DiameterJ/</a> (last check:20150702073801)
FFMPEG: <a href="http://fiji.sc/~schindelin/ffmpeg-plugins/">http://fiji.sc/~schindelin/ffmpeg-plugins/</a> (last check:20130606082449)
HDF5: <a href="http://sites.imagej.net/Ronneber/">http://sites.imagej.net/Ronneber/</a> (last check:20150214044119)
IMCF Uni Basel: <a href="http://sites.imagej.net/UniBas-IMCF/">http://sites.imagej.net/UniBas-IMCF/</a> (last
check:20150628105511)
Morphology: <a href="http://sites.imagej.net/Landini/">http://sites.imagej.net/Landini/</a> (last check:20140723075558)
MOSAIC ToolSuite:
<a href="http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/">http://mosaic.mpi-cbg.de/Downloads/update/Fiji/MosaicToolsuite/</a> (last
check:20150710085613)
NucleusJ: <a href="http://sites.imagej.net/PouletAxel/">http://sites.imagej.net/PouletAxel/</a> (last check:20141101023602)
OMERO 5.1: <a href="http://sites.imagej.net/OMERO-5.1/">http://sites.imagej.net/OMERO-5.1/</a> (last check:20150609144541)
PTBIOP: <a href="http://biop.epfl.ch/Fiji-Update/">http://biop.epfl.ch/Fiji-Update/</a> (last check:20150710012028)
ScientiFig: <a href="http://sites.imagej.net/Aigouy/">http://sites.imagej.net/Aigouy/</a> (last check:20150326043209)
Stowers: <a href="http://research.stowers.org/imagejplugins/updates/">http://research.stowers.org/imagejplugins/updates/</a> (last
check:20150602083540)
Files not up-to-date:
ee60586c (MODIFIED) 20150716085254 Contents/Info.plist
4325d004 (LOCAL_ONLY) 20150716085950 plugins/jars/j3dutils.jar</pre>
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