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<body><span class="vcard"><a class="email" href="mailto:ctrueden@wisc.edu" title="Curtis Rueden <ctrueden@wisc.edu>"> <span class="fn">Curtis Rueden</span></a>
</span> changed
<a class="bz_bug_link
bz_status_NEEDSINFO "
title="NEEDSINFO - Grid/Collection stitching not reading Prairie/Bruker stage location metadata"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1109">bug 1109</a>
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<th>What</th>
<th>Removed</th>
<th>Added</th>
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<td style="text-align:right;">Status</td>
<td>NEW
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<td>NEEDSINFO
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<td style="text-align:right;">CC</td>
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<td>ctrueden@wisc.edu
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<b><a class="bz_bug_link
bz_status_NEEDSINFO "
title="NEEDSINFO - Grid/Collection stitching not reading Prairie/Bruker stage location metadata"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1109#c1">Comment # 1</a>
on <a class="bz_bug_link
bz_status_NEEDSINFO "
title="NEEDSINFO - Grid/Collection stitching not reading Prairie/Bruker stage location metadata"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1109">bug 1109</a>
from <span class="vcard"><a class="email" href="mailto:ctrueden@wisc.edu" title="Curtis Rueden <ctrueden@wisc.edu>"> <span class="fn">Curtis Rueden</span></a>
</span></b>
<pre>Thanks for the report, Jimmy.
It would be good to isolate this behavior to Bio-Formats, by removing ImageJ
from the picture. You can use the showinf command line tool of Bio-Formats,
with the -omexml option, to dump the resultant OME-XML from the Bruker files.
If the stage positions are shown as 0.0 in the XML metadata, then it's a
Bio-Formats issue. And in that case, the problem should be reported to the OME
team:
<a href="https://www.openmicroscopy.org/site/support/bio-formats5.1/about/bug-reporting.html">https://www.openmicroscopy.org/site/support/bio-formats5.1/about/bug-reporting.html</a></pre>
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