<html>
<head>
<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - File Chooser is forced to Java FileChooser in macros and scripts"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1098">1098</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>File Chooser is forced to Java FileChooser in macros and scripts
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
<tr>
<th>OS</th>
<td>Mac OS
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>christophe.leterrier@gmail.com
</td>
</tr>
<tr>
<th>CC</th>
<td>christophe.leterrier@gmail.com
</td>
</tr></table>
<p>
<div>
<pre>When asking for a directory in macros and scripts (like getDirectory or
creating a new DirectoryChooser) , the Java File Chooser is always used,
irregardless of the option chosen in the ImageJ options, insteat of using the
OSX file chooser if needed.
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.10.3
java.version => 1.8.0_45
java.vendor => Oracle Corporation
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.8.0_45-b14
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 25.45-b02
java.vm.vendor => Oracle Corporation
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.8
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
/Library/Java/JavaVirtualMachines/jdk1.8.0_45.jdk/Contents/Home//jre
imagej.dir => /Users/christo/Travail/Labo/Processing/Fiji_current/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150618000647)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20150617220654)
BAR: <a href="http://sites.imagej.net/Tiago/">http://sites.imagej.net/Tiago/</a> (last check:20150604164025)
Biomedgroup: <a href="http://sites.imagej.net/Biomedgroup/">http://sites.imagej.net/Biomedgroup/</a> (last check:20150503123038)
DiameterJ: <a href="http://sites.imagej.net/DiameterJ/">http://sites.imagej.net/DiameterJ/</a> (last check:20150123222550)
GDSC-SMLM: <a href="http://sites.imagej.net/GDSC-SMLM/">http://sites.imagej.net/GDSC-SMLM/</a> (last check:20150327132750)
PTBIOP: <a href="http://biop.epfl.ch/Fiji-Update/">http://biop.epfl.ch/Fiji-Update/</a> (last check:20150616143734)
Files not up-to-date:
2418366b (MODIFIED) 20150526101715 Contents/Info.plist
1ad3be0d (LOCAL_ONLY) 20140925172353 jars/jpedalSTD.jar
953fe5a5 (LOCAL_ONLY) 20150527153548 luts/ThunderSTORM.lut
c1503832 (LOCAL_ONLY) 20150210161301 luts/parula.lut
ebd9888a (MODIFIED) 20130910230945 macros/StartupMacros.fiji.ijm
37d3408d (LOCAL_ONLY) 20130910230945 macros/StartupMacros.fiji_stock.ijm
d1606fa9 (LOCAL_ONLY) 20150119165712 macros/myTool.txt
1e948734 (LOCAL_ONLY) 20140423133536 macros/toolsets/3D_AIS_Measure.ijm
39bf367e (LOCAL_ONLY) 20150202162414 macros/toolsets/ChriSTORM.ijm
dca2b75a (LOCAL_ONLY) 20121116182554 macros/toolsets/Intensity Ratios
Tools.ijm
d28c5f20 (LOCAL_ONLY) 20140331210831 macros/toolsets/PeakFinder_Tool.txt
e9cc69cf (LOCAL_ONLY) 20140116225135 macros/toolsets/Simple AIS Measure
Tools.ijm
491f95aa (LOCAL_ONLY) 20120531234749 macros/toolsets/Test_Shortcut.ijm
b4343d06 (LOCAL_ONLY) 20150130092313
plugins/ChriSTORM/Batch_Add_Z_Uncertainty.js
b64896ea (LOCAL_ONLY) 20150618104605 plugins/ChriSTORM/Batch_NS_to_TS.js
54f383d2 (LOCAL_ONLY) 20150217185734 plugins/ChriSTORM/Batch_Process_Locs.ijm
9b110ba8 (LOCAL_ONLY) 20150128154352
plugins/ChriSTORM/Batch_Remove_Extreme_Z.ijm
fb1cf5ae (LOCAL_ONLY) 20150605183711 plugins/ChriSTORM/Batch_Warp_Channels.js
a5aead38 (LOCAL_ONLY) 20150128144443 plugins/ChriSTORM/F-NStxtSplit.js
dae326fc (LOCAL_ONLY) 20150618103328 plugins/ChriSTORM/F-NStxtTranslate.js
0f33f0d1 (LOCAL_ONLY) 20150130092313 plugins/ChriSTORM/F-TSAddZUnc.js
c01157dc (LOCAL_ONLY) 20150513134620 plugins/ChriSTORM/F-TSRotate.js
9fce7546 (LOCAL_ONLY) 20150618103622 plugins/ChriSTORM/F-TSTranslate.js
065b9f7d (LOCAL_ONLY) 20150130092313 plugins/ChriSTORM/F-TSWarp.js
7354eee5 (LOCAL_ONLY) 20150605144943
plugins/ChriSTORM/Generate_Reconstructions.ijm
95fd7c62 (LOCAL_ONLY) 20150605145059
plugins/ChriSTORM/Generate_Zoom&Slices.ijm
10436835 (LOCAL_ONLY) 20150129185850 plugins/ChriSTORM/Get_Z_Range.js
06a2cbc2 (LOCAL_ONLY) 20150130092313
plugins/ChriSTORM/Single_Add_Z_Uncertainty.js
c08a3f2d (LOCAL_ONLY) 20150130092313 plugins/ChriSTORM/Single_Get_Z_Range.js
c23ad61f (LOCAL_ONLY) 20150130092313 plugins/ChriSTORM/Single_NS_split.js
01fff67b (LOCAL_ONLY) 20150618104614 plugins/ChriSTORM/Single_NS_to_TS.js
6d2ebbdd (LOCAL_ONLY) 20150130092314 plugins/ChriSTORM/Single_Rotate_Locs.js
c3d2eb4c (LOCAL_ONLY) 20141027102052 plugins/ChriSTORM/Slice_to_Zoom_ROI.ijm
de9b2ed2 (LOCAL_ONLY) 20150527160500 plugins/ChriSTORM/newSyntax.ijm
55958f35 (LOCAL_ONLY) 20150618103442 plugins/Thunder_STORM.jar
f58c5b2e (LOCAL_ONLY) 20131105141630 plugins/added
macros/Calculate_Ratios.ijm
b70ea00d (LOCAL_ONLY) 20150121171007 plugins/added
macros/Calculate_Ratios_2.ijm
c73c63d4 (LOCAL_ONLY) 20120203190735 plugins/added macros/Calib_EMGain.ijm
23565f48 (LOCAL_ONLY) 20120123170343 plugins/added
macros/Convert_Image_to_Icon.ijm
36c6bbff (LOCAL_ONLY) 20150121103457 plugins/added
macros/Convert_ndf_to_ROI.ijm
5759d835 (LOCAL_ONLY) 20140306191916 plugins/added
macros/Correct_&_Split_Channels.ijm
1e1afbf4 (LOCAL_ONLY) 20140517214448 plugins/added
macros/Duplicate_wLabel.ijm
6a5e9f21 (LOCAL_ONLY) 20120120190326 plugins/added macros/Edit_Cat_ROIs.ijm
d0ae64a9 (LOCAL_ONLY) 20120523184024 plugins/added macros/Extract_LIF.ijm
681f02d5 (LOCAL_ONLY) 20140423133537 plugins/added macros/Extract_Zeiss.ijm
fa330291 (LOCAL_ONLY) 20130530200036 plugins/added macros/Generate_Comets.ijm
b4baa60d (LOCAL_ONLY) 20130908215841 plugins/added macros/Generate_Kymos.ijm
40277102 (LOCAL_ONLY) 20140624222024 plugins/added
macros/Generate_Stacks_Folder.ijm
d4e49dd3 (LOCAL_ONLY) 20121116182556 plugins/added
macros/Generate_Tracings_Folder_monoCh.ijm
d1f51ed7 (LOCAL_ONLY) 20150320102620 plugins/added
macros/Generate_Tracings_Folder_multiCh.ijm
aa4dfffd (LOCAL_ONLY) 20140211211257 plugins/added
macros/Make_Projections.ijm
6b42d1ed (LOCAL_ONLY) 20120203190735 plugins/added macros/Mean_vs_SD.ijm
951f3d28 (LOCAL_ONLY) 20150323122536 plugins/added
macros/Measure_Intensities.ijm
ec2b207d (LOCAL_ONLY) 20120120190326 plugins/added macros/Normalize_Movie.ijm
44725a89 (LOCAL_ONLY) 20120120190326 plugins/added
macros/Pad_Image_to_Stack.ijm
848b3f14 (LOCAL_ONLY) 20140201140529 plugins/added macros/Plot_Column.ijm
cf33bc89 (LOCAL_ONLY) 20130419214758 plugins/added
macros/RGB_Profiles_Tool.ijm
a04dd29d (LOCAL_ONLY) 20120120190326 plugins/added
macros/Register_Coverslip_Zeiss.ijm
464c88ea (LOCAL_ONLY) 20120120190326 plugins/added macros/Running_Average.ijm
7eec215c (LOCAL_ONLY) 20120928172722 plugins/added
macros/Simple_AIS_Measure.ijm
61572565 (LOCAL_ONLY) 20130506225216 plugins/added
macros/Simple_AIS_Measure_new.ijm
d3faf6a6 (LOCAL_ONLY) 20120120190326 plugins/added
macros/Stitch_Processed_Mosaic.ijm
4a24763e (LOCAL_ONLY) 20120120190326 plugins/added macros/Transfer_Labels.ijm
3e4083ae (LOCAL_ONLY) 20140829213750 plugins/added
plugins/Actin2_Quantifier.class
3fb5f7a5 (LOCAL_ONLY) 20060922124728 plugins/added plugins/Align_4.class
ac3d73f5 (LOCAL_ONLY) 20130502205606 plugins/added
plugins/Align_RGB_planes.jar
f0aabf4f (LOCAL_ONLY) 20141204110724 plugins/added plugins/Align_Slice.class
819f350a (LOCAL_ONLY) 20140813222136 plugins/added plugins/Cidre_Plugin.jar
0a5c1981 (LOCAL_ONLY) 20130419214758 plugins/added plugins/Color_Profiler.jar
c60c5966 (LOCAL_ONLY) 20131115215344 plugins/added plugins/FIRE_plugin.jar
66f0be96 (LOCAL_ONLY) 20120120190326 plugins/added
plugins/Fast_Filters$1.class
7b74cdd1 (LOCAL_ONLY) 20120120190326 plugins/added plugins/Fast_Filters.class
e9e5c061 (LOCAL_ONLY) 20140129213842 plugins/added
plugins/Image_Stabilizer.class
1fd3d1a6 (LOCAL_ONLY) 20140219221145 plugins/added
plugins/Image_Stabilizer_Log_Applier.class
a7eaa6cb (LOCAL_ONLY) 20140929103108 plugins/added
plugins/KymoResliceWide_.jar
a5d02cb7 (LOCAL_ONLY) 20140929103541 plugins/added plugins/Kymo_graph1001.jar
dad4b299 (LOCAL_ONLY) 20130731193228 plugins/added plugins/M2LE_Pipeline.jar
f07dd15c (LOCAL_ONLY) 20120120190326 plugins/added plugins/NeuronJ_.jar
2b0f8e5e (LOCAL_ONLY) 20130419214758 plugins/added plugins/Radial_Profile.jar
15638c2e (LOCAL_ONLY) 20140331202439 plugins/added
plugins/Radial_Profile_Angle_Ext.jar
050d136b (LOCAL_ONLY) 20150116121620 plugins/added plugins/SOS_release.jar
97813c51 (LOCAL_ONLY) 20130331152055 plugins/added
plugins/Sigma_Filter_Plus.class
be06fe59 (LOCAL_ONLY) 20140929103634 plugins/added plugins/action_bar202.jar
5229937c (LOCAL_ONLY) 20120120190326 plugins/added
plugins/mm_nd_and_roi_pack.jar
b551b948 (LOCAL_ONLY) 20150526101715 plugins/added scripts/Autocorr.js
8fa95c18 (LOCAL_ONLY) 20140916183646 plugins/added scripts/Fit_Sinus.js
65cc7812 (LOCAL_ONLY) 20150526101715 plugins/added scripts/Fit_Sinus_AC.js
216ea972 (LOCAL_ONLY) 20150324111144 plugins/added
scripts/Get_by_Conditions.js
9b45a4b8 (LOCAL_ONLY) 20150527154338 plugins/added scripts/Make_TS_LUT.js
f75d3f54 (LOCAL_ONLY) 20150403123207 plugins/added scripts/Pro_Feat_Fit.js
8d6c5209 (LOCAL_ONLY) 20150319172543 plugins/added
scripts/Profile_AlignRef.js
4f471c4a (LOCAL_ONLY) 20140802100606 plugins/added scripts/Reassign_ROIs_HS
channels.js
b5d7dea9 (LOCAL_ONLY) 20140915182716 plugins/added scripts/Reassign_ROIs_HS
to S.js
5dea0423 (LOCAL_ONLY) 20140619220039 plugins/added
scripts/Remove_Background_Median.js
ccc0dfcb (LOCAL_ONLY) 20140624222024 plugins/added scripts/SAM2_V2.js</pre>
</div>
</p>
<hr>
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<ul>
<li>You are the assignee for the bug.</li>
</ul>
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