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<head>
<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - convert 16 to 8bit 4CH hyperstack fails"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1064">1064</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>convert 16 to 8bit 4CH hyperstack fails
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>vbindoka@bsd.uchicago.edu
</td>
</tr>
<tr>
<th>CC</th>
<td>vbindoka@bsd.uchicago.edu
</td>
</tr></table>
<p>
<div>
<pre>tried on virtual and also on real stack, but conversion fails with mssg:
[also unclear why FIJI name is hijacked by 'open spim' name after last
patch cycles]
OpenSPIM 2.0.0-rc-30/1.49s; Java 1.6.0_24 [64-bit]; Windows 7 6.1; 4896MB of
13000MB (37%)
java.lang.NullPointerException
at ij.CompositeImage.setup(CompositeImage.java:136)
at ij.CompositeImage.reset(CompositeImage.java:534)
at ij.ImagePlus.setStack(ImagePlus.java:683)
at ij.process.StackConverter.convertRGBToGray8(StackConverter.java:102)
at ij.process.StackConverter.convertToGray8(StackConverter.java:40)
at ij.plugin.Converter.convert(Converter.java:59)
at ij.plugin.Converter.run(Converter.java:20)
at ij.IJ.runPlugIn(IJ.java:169)
at ij.Executer.runCommand(Executer.java:131)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:662)
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: E:\DEC201~1/java/win64/jdk1.6.0_24//jre
imagej.dir => E:\DEC201~1
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150501134914)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20150504084352)
3D ImageJ Suite: <a href="http://sites.imagej.net/Tboudier/">http://sites.imagej.net/Tboudier/</a> (last check:20150427052945)
FFMPEG: <a href="http://fiji.sc/~schindelin/ffmpeg-plugins/">http://fiji.sc/~schindelin/ffmpeg-plugins/</a> (last check:20130606102449)
GDSC-SMLM: <a href="http://sites.imagej.net/GDSC-SMLM/">http://sites.imagej.net/GDSC-SMLM/</a> (last check:20150327072750)
HDF5: <a href="http://sites.imagej.net/Ronneber/">http://sites.imagej.net/Ronneber/</a> (last check:20150214064119)
IJPB-plugins: <a href="http://sites.imagej.net/IJPB-plugins/">http://sites.imagej.net/IJPB-plugins/</a> (last check:20150323044329)
Morphology: <a href="http://sites.imagej.net/Landini/">http://sites.imagej.net/Landini/</a> (last check:20140723095558)
MIST: <a href="http://sites.imagej.net/NIST-ISG-MIST/">http://sites.imagej.net/NIST-ISG-MIST/</a> (last check:20150416125920)
OpenSPIM: <a href="http://openspim.org/update/">http://openspim.org/update/</a> (last check:20150427101206)
BigDataViewer: <a href="http://sites.imagej.net/Pietzsch/">http://sites.imagej.net/Pietzsch/</a> (last check:20141221090506)
Micro-Manager-dev: <a href="http://sites.imagej.net/Micro-Manager-dev/">http://sites.imagej.net/Micro-Manager-dev/</a> (last
check:20150501012722)
Files not up-to-date:
1ad3be0d (LOCAL_ONLY) 20141222042830 jars/jpedalSTD.jar
3b282216 (LOCAL_ONLY) 20150430163144
mm/win32/OlympusIX3Control/OlympusIX3Control.old.exe
956e4529 (LOCAL_ONLY) 20150430163144
mm/win64/OlympusIX3Control/OlympusIX3Control.old.exe
6d337b7a (LOCAL_ONLY) 20140730142734 plugins/Accurate_Gaussian_Blur.class
6e9d50db (LOCAL_ONLY) 20140320051924 plugins/Adjustable_Watershed.class
12ec0761 (LOCAL_ONLY) 20120224100622 plugins/Align_RGB_planes.class
0c575fd1 (LOCAL_ONLY) 20141209160514 plugins/BioVoxxel_Plugins.jar
52ff6766 (LOCAL_ONLY) 20150115075008 plugins/Create_Template.jar
55de57f2 (LOCAL_ONLY) 20050408121420 plugins/DecCredits$1.class
66a64476 (LOCAL_ONLY) 20050408121420 plugins/DecCredits.class
fd4ce3cd (LOCAL_ONLY) 20050408103628 plugins/DeconvolutionFFT.class
b0398adb (LOCAL_ONLY) 20141028073350
plugins/DeconvolutionLab/DeconvolutionLab_.jar
8866a3cd (LOCAL_ONLY) 20050408103628 plugins/DeconvolutionSolution.class
ce989b93 (LOCAL_ONLY) 20050408103628 plugins/DeconvolutionWavelets.class
13072662 (LOCAL_ONLY) 20050408121420 plugins/Deconvolution_.class
11326750 (LOCAL_ONLY) 20050408103628 plugins/FFT1D.class
18f23277 (LOCAL_ONLY) 20050408103628 plugins/FourierSpace.class
44693e65 (LOCAL_ONLY) 20150325121214 plugins/Frac_Lac.jar
348da731 (LOCAL_ONLY) 20141126044659 plugins/GHT_.jar
15a0aac2 (LOCAL_ONLY) 20050408150536 plugins/GibsonPSF.class
52861b7c (LOCAL_ONLY) 20050408150244 plugins/GibsonPSFF.class
f481dc68 (LOCAL_ONLY) 20120817074900 plugins/Hybrid_2D_Filters.class
6b2de3e5 (LOCAL_ONLY) 20120817084143 plugins/Hybrid_3D_Filters.class
e9cb6eb7 (LOCAL_ONLY) 20150115083713 plugins/Image_CorrelationJ_1o.class
d6bc39b9 (LOCAL_ONLY) 20141023044548 plugins/Jay_Plugins.jar
04b38ca7 (LOCAL_ONLY) 20141023044548 plugins/Jay_Plugins2.jar
71ae5c42 (LOCAL_ONLY) 20140509130342 plugins/KalmanOpenStackFilter_.class
44f1acfa (LOCAL_ONLY) 20121128135145 plugins/Mexican_Hat_Filter.class
53c5c1ad (LOCAL_ONLY) 20141103073745 plugins/NL_Means_.jar
4ed208ff (LOCAL_ONLY) 20140929064046 plugins/NanoTrackJ_.jar
21927175 (LOCAL_ONLY) 20140808090713 plugins/PIV_.jar
b3b13b1f (LOCAL_ONLY) 20050408150244 plugins/PSFCredits$1.class
cb99705d (LOCAL_ONLY) 20050408150244 plugins/PSFCredits.class
de90b917 (LOCAL_ONLY) 20050408150536 plugins/PSFCreditsG$1.class
e33950eb (LOCAL_ONLY) 20050408150536 plugins/PSFCreditsG.class
9f2412ff (LOCAL_ONLY) 20141028082626 plugins/PSF_Generator.jar
5a3abd78 (LOCAL_ONLY) 20050408150536 plugins/PSF_Gibson_.class
65b190f7 (LOCAL_ONLY) 20121002063426 plugins/PSF_Simple_.class
0c89ccf5 (LOCAL_ONLY) 20140507100709 plugins/PoissonNMF_.jar
12289f6e (LOCAL_ONLY) 20110916093010 plugins/PureDenoise_.jar
33ca5f87 (LOCAL_ONLY) 20141215122204 plugins/Thunder_STORM.jar
69b16199 (LOCAL_ONLY) 20050408103628 plugins/WaveDaub4.class
f0990b22 (LOCAL_ONLY) 20050408103628 plugins/WaveDaub4Filter.class
27901023 (LOCAL_ONLY) 20050408152652 plugins/Wavelet_Deconvolution_.class
71331805 (LOCAL_ONLY) 20140314082430 plugins/jacop_.jar
9bbfb280 (LOCAL_ONLY) 20140225135257 plugins/octane2_.jar</pre>
</div>
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