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<body><span class="vcard"><a class="email" href="mailto:hinerm@gmail.com" title="Mark Hiner <hinerm@gmail.com>"> <span class="fn">Mark Hiner</span></a>
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<a class="bz_bug_link
bz_status_CONFIRMED "
title="CONFIRMED - Stitching does not load file - nothing happens"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1024">bug 1024</a>
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<th>What</th>
<th>Removed</th>
<th>Added</th>
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<td style="text-align:right;">Status</td>
<td>NEW
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<td>CONFIRMED
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<b><a class="bz_bug_link
bz_status_CONFIRMED "
title="CONFIRMED - Stitching does not load file - nothing happens"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1024#c5">Comment # 5</a>
on <a class="bz_bug_link
bz_status_CONFIRMED "
title="CONFIRMED - Stitching does not load file - nothing happens"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1024">bug 1024</a>
from <span class="vcard"><a class="email" href="mailto:hinerm@gmail.com" title="Mark Hiner <hinerm@gmail.com>"> <span class="fn">Mark Hiner</span></a>
</span></b>
<pre>Hi Sebastian,
The IMCF update site deploys a custom Stitching plugin, which clashes with the
plugin provided by the Bio-Formats update site.
By default, Fiji ships Bio-Formats 5.0.x. The Bio-Formats update site provides
Bio-Formats 5.1 which has breaking API changes that affect the Stitching
plugin. Thus the Bio-Formats update site also provides a 5.1-compatible
Stitching plugin.
Enabling IMCF overwrites the Bio-Formats update site's Stitching plugin with a
5.0 version, which then breaks because of 5.1 and 5.0 incompatibility.
To fix your installation, I would suggest uninstalling both Bio-Formats and
IMCF update sites ONE AT A TIME.
Then just enable one of the two based on your current needs (e.g. Bio-Formats
if you need 5.1).
I am also going to file a bug report for the updater, as I could not find a way
to have both update sites installed but have the Bio-Formats Stitching.jar
"win".</pre>
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