<html>
    <head>
      <base href="http://fiji.sc/bugzilla/" />
    </head>
    <body><table border="1" cellspacing="0" cellpadding="8">
        <tr>
          <th>Bug ID</th>
          <td><a class="bz_bug_link 
          bz_status_NEW "
   title="NEW - Array.rankPositions does not order positions correctly"
   href="http://fiji.sc/bugzilla/show_bug.cgi?id=1003">1003</a>
          </td>
        </tr>

        <tr>
          <th>Summary</th>
          <td>Array.rankPositions does not order positions correctly
          </td>
        </tr>

        <tr>
          <th>Product</th>
          <td>Fiji
          </td>
        </tr>

        <tr>
          <th>Version</th>
          <td>unspecified
          </td>
        </tr>

        <tr>
          <th>Hardware</th>
          <td>PC
          </td>
        </tr>

        <tr>
          <th>OS</th>
          <td>Windows
          </td>
        </tr>

        <tr>
          <th>Status</th>
          <td>NEW
          </td>
        </tr>

        <tr>
          <th>Severity</th>
          <td>normal
          </td>
        </tr>

        <tr>
          <th>Priority</th>
          <td>P4
          </td>
        </tr>

        <tr>
          <th>Component</th>
          <td>Plugins
          </td>
        </tr>

        <tr>
          <th>Assignee</th>
          <td>imagej-bugs@imagej.net
          </td>
        </tr>

        <tr>
          <th>Reporter</th>
          <td>tokamoto@biosearchtech.com
          </td>
        </tr>

        <tr>
          <th>CC</th>
          <td>tokamoto@biosearchtech.com
          </td>
        </tr></table>
      <p>
        <div>
        <pre>Running ImageJ version 1.49o.  I'm trying to sort multiple arrays only in
relation to one of the arrays.  Need to have the rank of that one array, so I
can sort all of them.  Tested the Array.rankPositions function, but it doesn't
output the right rankings.  Below is the small test macro I used, and below
that is the output.

test = newArray(15, 10, 50, 20, 40, 1, 2, 3);
new = Array.rankPositions(test);
Array.show(test, new);

output is:
test  new
15  5
10  6
50  7
20  1
40  0
1  3
2  4
3  2

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => New Oracle
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: C:\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150122024514)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20150203080057)

Files not up-to-date:
  772f7227 (MODIFIED) 20150203100028 jars/ij-1.49m.jar
  1ad3be0d (LOCAL_ONLY) 20150107090442 jars/jpedalSTD.jar
  6ddc36e4 (LOCAL_ONLY) 20150127113614 macros/Individual/SNR.ijm
  7e29c562 (LOCAL_ONLY) 20150109131628
macros/Individual/Startup/StartupMacros.fiji.ijm
  43ce2fa9 (LOCAL_ONLY) 20150127113919 macros/Individual/automerge.ijm
  ed5b891e (LOCAL_ONLY) 20150109133039 macros/Individual/autominmaxtif.ijm
  23985b42 (LOCAL_ONLY) 20150127114211 macros/Individual/cellSNR.ijm
  bf227d21 (LOCAL_ONLY) 20150127114005 macros/Individual/openzproject.ijm
  3e3bcc64 (LOCAL_ONLY) 20150127114054 macros/Individual/regexmerge.ijm
  c86dc415 (MODIFIED) 20150209134941 macros/StartupMacros.fiji.ijm
  9305cb25 (LOCAL_ONLY) 20150123160923 plugins/NicoIJPlugins_.jar
  a5f48127 (LOCAL_ONLY) 20150123160730 plugins/TSFProto.jar
  e5789fc6 (LOCAL_ONLY) 20150123160727 plugins/commons-math-2.0.jar
  7c3684b3 (LOCAL_ONLY) 20150123160732 plugins/gproto.jar
  5e62e842 (LOCAL_ONLY) 20150123160725 plugins/jcommon-1.0.16.jar
  f38a3c3b (LOCAL_ONLY) 20150123160712 plugins/jfreechart-1.0.13.jar
  569c5489 (LOCAL_ONLY) 20141120221500 plugins/mcib3d-core3.0.jar
  1979e4e6 (LOCAL_ONLY) 20141120234754 plugins/mcib3d_plugins3.0.jar
  8cb8d89b (LOCAL_ONLY) 20120924071500 plugins/quickhull3d.jar</pre>
        </div>
      </p>
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      <ul>
          <li>You are the assignee for the bug.</li>
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