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<body><span class="vcard"><a class="email" href="mailto:ctrueden@wisc.edu" title="Curtis Rueden <ctrueden@wisc.edu>"> <span class="fn">Curtis Rueden</span></a>
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<a class="bz_bug_link
bz_status_REOPENED "
title="REOPENED - HDF5 plugin doesnt load"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=989">bug 989</a>
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<th>What</th>
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<td style="text-align:right;">CC</td>
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<td>pietzsch@mpi-cbg.de
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<b><a class="bz_bug_link
bz_status_REOPENED "
title="REOPENED - HDF5 plugin doesnt load"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=989#c5">Comment # 5</a>
on <a class="bz_bug_link
bz_status_REOPENED "
title="REOPENED - HDF5 plugin doesnt load"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=989">bug 989</a>
from <span class="vcard"><a class="email" href="mailto:ctrueden@wisc.edu" title="Curtis Rueden <ctrueden@wisc.edu>"> <span class="fn">Curtis Rueden</span></a>
</span></b>
<pre>The version of jhdf5 shipped on the Fiji update site is 13.06.2. This is a
dependency brought in by the BigDataViewer:
*
<a href="https://github.com/bigdataviewer/bigdataviewer-core/blob/bigdataviewer-core-1.0.2/pom.xml#L38-L41">https://github.com/bigdataviewer/bigdataviewer-core/blob/bigdataviewer-core-1.0.2/pom.xml#L38-L41</a>
*
<a href="https://github.com/bigdataviewer/pom-bigdataviewer/blob/bigdataviewer-1.0.5/pom.xml#L52">https://github.com/bigdataviewer/pom-bigdataviewer/blob/bigdataviewer-1.0.5/pom.xml#L52</a>
I tried downloading the 14.12.0 release from
<a href="https://wiki-bsse.ethz.ch/display/JHDF5/Download+Page">https://wiki-bsse.ethz.ch/display/JHDF5/Download+Page</a>, but after unpacking I
see several JAR files in the lib folder, as well as a "batteries_included"
uber-jar (which we definitely do not want to ship with Fiji because it embeds
several unshaded dependencies including Apache Commons IO).
It would be ideal if the JHDF5 project could provide consumable Maven
artifact(s) so that the BigDataViewer could be easily and cleanly upgraded to
use newer versions as they are released.
@Olaf: Is such a Mavenization something you could make happen on your end? If
not, what is the best way to proceed here? I can do a one-time deployment of
14.12.0 to the ImageJ Maven repository, and upgrade the core Fiji update site
to use it, but I don't want to have to do that every time a new JHDF5 is
released.</pre>
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