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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - erroneous db.xml.gz in ScientiFig update site"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=983">983</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>erroneous db.xml.gz in ScientiFig update site
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Linux
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>baigouy@gmail.com
</td>
</tr>
<tr>
<th>CC</th>
<td>baigouy@gmail.com
</td>
</tr></table>
<p>
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<pre>Hello,
I have found a pb with my ScientiFig FIJI update site, it lists
"plugins/Series_Labeler-2.0.0-SNAPSHOT.jar" and
"plugins/Scripts/Plugins/Utilities/Record_Window.py" as part of ScientiFig,
although those plugins are not mine. I downloaded the following file
(<a href="http://sites.imagej.net/Aigouy/db.xml.gz">http://sites.imagej.net/Aigouy/db.xml.gz</a>), unzipped it and opened it with a
text editor and could find the following entries:
<pluginRecords>
<plugin filename="plugins/Scripts/Plugins/Utilities/Record_Window.py">
<version checksum="9d4d012ab3325fb24ab3ae0957c2aea663c6dd12"
timestamp="20120808233219" filesize="5853"/>
<previous-version timestamp="20120808233219"
checksum="9d4d012ab3325fb24ab3ae0957c2aea663c6dd12"
filename="plugins/Scripts/Plugins/Utilities/Record_Window.py"/>
</plugin>
<plugin filename="plugins/Series_Labeler-2.0.0-SNAPSHOT.jar">
<category>annotation</category>
<version checksum="8cb22fe2deca014a2f6ec1efd12b09b95b994cc3"
timestamp="20140225152316" filesize="32677">
<description>This plugin allows the user to put a customizable time
code into time series.
</description>
<dependency filename="jars/ij.jar" timestamp="20101201163152"/>
<link><a href="http://pacific.mpi-cbg.de/Series_Labeler">http://pacific.mpi-cbg.de/Series_Labeler</a></link>
<author>Daniel James White</author>
<author>Tom Kazimiers</author>
</version>
I don't think I have ever uploaded those files with my plugin (otherwise this
would be by mistake and obviously thoses plugins are not present in my
<a href="http://sites.imagej.net/Aigouy">http://sites.imagej.net/Aigouy</a> file list), so I assume it is/was a bug of the
FIJI/IJ updater, my question is can some administrator edit my db.xml.gz file
to remove those entries or tell me how I can fix that by myself. This is
important for me to solve this soon since some of my users cannot use my update
site (they get an error when the FIJI updater tries to download the
series_labeler.jar that does is not present on my update site).
many thanks and happy new year,
benoit
Information about your version of Java:
os.arch => amd64
os.name => Linux
os.version => 3.16.0-28-generic
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => gnome
file.separator => /
The up-to-date check says: UP_TO_DATE
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: /home/benoit/Fiji.app/java/linux-amd64/jdk1.6.0_24//jre
imagej.dir => /home/benoit/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20141223000235)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20141222142604)
IBMP-CNRS: <a href="http://www-ibmp.u-strasbg.fr/fijiupdates/">http://www-ibmp.u-strasbg.fr/fijiupdates/</a> (last
check:20140526164644)
ScientiFig: <a href="http://sites.imagej.net/Aigouy/">http://sites.imagej.net/Aigouy/</a> (last check:20141110150420)
Files not up-to-date:
a5d02cb7 (LOCAL_ONLY) 20131005162326 plugins/Kymo_graph1001.jar
f4038092 (LOCAL_ONLY) 20141222150248 plugins/ScientiFig/ScientiFigPrefs.txt
3ff79941 (LOCAL_ONLY) 20150105131204 plugins/Spb/tutu_.py
740a32b3 (LOCAL_ONLY) 20140109112924 plugins/SplittedChannelsMerger_.class
d31ed141 (LOCAL_ONLY) 20131016094131 plugins/Stack_Focuser_.class
5f60d96e (LOCAL_ONLY) 20140306085844 plugins/Watershed_.jar</pre>
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</p>
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