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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - NoClassDefFoundError in Multi-view registration"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=975">975</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>NoClassDefFoundError in Multi-view registration
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
<tr>
<th>OS</th>
<td>Mac OS
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>nico.stuurman@ucsf.edu
</td>
</tr>
<tr>
<th>CC</th>
<td>nico.stuurman@ucsf.edu
</td>
</tr></table>
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<pre>Running the command Plugins> Multiview Reconstruction>Define Interest Points
for Reconstruction (using any dataset) leads to the stacktrace below. It looks
to me as if the plugin has been compiled against a imglib2 version that is
different from the one shipped in the current version of Fiji.
(Fiji Is Just) ImageJ 2.0.0-rc-15/1.49m; Java 1.6.0_24 [64-bit]; Windows 7 6.1;
222MB of 20087MB (1%)
java.lang.NoClassDefFoundError: net/imglib2/util/Pair^M
at
spim.fiji.spimdata.imgloaders.AbstractImgLoader.updateXMLMetaData(AbstractImgLoader.java:131)^M
at
spim.fiji.spimdata.imgloaders.AbstractImgLoader.updateXMLMetaData(AbstractImgLoader.java:114)^M
at
spim.fiji.spimdata.imgloaders.AbstractImgLoader.updateXMLMetaData(AbstractImgLoader.java:102)^M
at
spim.fiji.plugin.Interest_Point_Detection.run(Interest_Point_Detection.java:196)^M
at ij.IJ.runUserPlugIn(IJ.java:202)^M
at ij.IJ.runPlugIn(IJ.java:166)^M
at ij.Executer.runCommand(Executer.java:131)^M
at ij.Executer.run(Executer.java:64)^M
at java.lang.Thread.run(Thread.java:662)^M
Caused by: java.lang.ClassNotFoundException: net.imglib2.util.Pair^M
at java.net.URLClassLoader$1.run(URLClassLoader.java:202)^M
at java.security.AccessController.doPrivileged(Native Method)^M
at java.net.URLClassLoader.findClass(URLClassLoader.java:190)^M
at java.lang.ClassLoader.loadClass(ClassLoader.java:307)^M
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)^M
at java.lang.ClassLoader.loadClass(ClassLoader.java:248)^M
... 9 more^M
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.10.1
java.version => 1.6.0_65
java.vendor => Apple Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_65-b14-466.1-11M4716
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 20.65-b04-466.1
java.vm.vendor => Apple Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: CHECK_TURNED_OFF
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: null
imagej.dir => /Applications/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20141211095341)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20141210124822)
3D ImageJ Suite: <a href="http://sites.imagej.net/Tboudier/">http://sites.imagej.net/Tboudier/</a> (last check:20141207235245)
BigDataViewer: <a href="http://sites.imagej.net/Pietzsch/">http://sites.imagej.net/Pietzsch/</a> (last check:20141126030148)
Bio-Formats: <a href="http://sites.imagej.net/Bio-Formats/">http://sites.imagej.net/Bio-Formats/</a> (last check:20141209182639)
FFMPEG: <a href="http://fiji.sc/~schindelin/ffmpeg-plugins/">http://fiji.sc/~schindelin/ffmpeg-plugins/</a> (last check:20130606082449)
IBMP-CNRS: <a href="http://www-ibmp.u-strasbg.fr/fijiupdates/">http://www-ibmp.u-strasbg.fr/fijiupdates/</a> (last
check:20140526074644)
LOCI: <a href="http://sites.imagej.net/LOCI/">http://sites.imagej.net/LOCI/</a> (last check:20141210115338)
Files not up-to-date:
c3f8675e (OBSOLETE_UNINSTALLED) 20140309014719 jars/Jama.jar</pre>
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</p>
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