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<head>
<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - latest update throws exceptions"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=961">961</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>latest update throws exceptions
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Linux
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>charless.fowlkes@gmail.com
</td>
</tr>
<tr>
<th>CC</th>
<td>charless.fowlkes@gmail.com
</td>
</tr></table>
<p>
<div>
<pre>To reproduce the problem, download latest version of Fiji (continuous build,
linux 64bit)
Run the Fiji updateder
Restart
yields the following excpetion ->
log4j:WARN No appenders could be found for logger
(org.bushe.swing.event.EventService).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See <a href="http://logging.apache.org/log4j/1.2/faq.html#noconfig">http://logging.apache.org/log4j/1.2/faq.html#noconfig</a> for more
info.
java.lang.IllegalArgumentException: Cannot modify method: public void run()
at net.imagej.patcher.CodeHacker.insertAtTopOfMethod(CodeHacker.java:167)
at
net.imagej.patcher.LegacyExtensions.injectHooks(LegacyExtensions.java:229)
at net.imagej.patcher.LegacyInjector.inject(LegacyInjector.java:308)
at net.imagej.patcher.LegacyInjector.injectHooks(LegacyInjector.java:109)
at
net.imagej.patcher.LegacyEnvironment.initialize(LegacyEnvironment.java:101)
at
net.imagej.patcher.LegacyEnvironment.applyPatches(LegacyEnvironment.java:495)
at net.imagej.patcher.LegacyInjector.preinit(LegacyInjector.java:397)
at net.imagej.patcher.LegacyInjector.preinit(LegacyInjector.java:376)
at
net.imagej.legacy.DefaultLegacyService.<clinit>(DefaultLegacyService.java:124)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at java.lang.Class.newInstance0(Class.java:355)
at java.lang.Class.newInstance(Class.java:308)
at
org.scijava.service.ServiceHelper.createServiceRecursively(ServiceHelper.java:302)
at
org.scijava.service.ServiceHelper.createExactService(ServiceHelper.java:269)
at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:231)
at org.scijava.service.ServiceHelper.loadService(ServiceHelper.java:194)
at org.scijava.service.ServiceHelper.loadServices(ServiceHelper.java:166)
at org.scijava.Context.<init>(Context.java:244)
at org.scijava.Context.<init>(Context.java:203)
at org.scijava.Context.<init>(Context.java:142)
at org.scijava.Context.<init>(Context.java:98)
at org.scijava.Context.<init>(Context.java:86)
at net.imagej.ImageJ.<init>(ImageJ.java:82)
at net.imagej.Main.launch(Main.java:61)
at net.imagej.Main.main(Main.java:73)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at net.imagej.launcher.ClassLauncher.launch(ClassLauncher.java:258)
at net.imagej.launcher.ClassLauncher.run(ClassLauncher.java:184)
at net.imagej.launcher.ClassLauncher.main(ClassLauncher.java:76)
Caused by: java.lang.IllegalArgumentException: No such class:
JavaScriptEvaluator
at net.imagej.patcher.CodeHacker.getClass(CodeHacker.java:880)
at net.imagej.patcher.CodeHacker.getMethod(CodeHacker.java:906)
at net.imagej.patcher.CodeHacker.getBehavior(CodeHacker.java:896)
at net.imagej.patcher.CodeHacker.insertAtTopOfMethod(CodeHacker.java:158)
... 34 more
Caused by: javassist.NotFoundException: JavaScriptEvaluator
at javassist.ClassPool.get(ClassPool.java:450)
at net.imagej.patcher.CodeHacker.getClass(CodeHacker.java:875)
... 37 more
Information about your version of Java:
os.arch => amd64
os.name => Linux
os.version => 3.11.0-19-generic
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
/home/fowlkes/bin/Fiji.app/java/linux-amd64/jdk1.6.0_24//jre
imagej.dir => /home/fowlkes/bin/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20141109211443)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20141111114731)</pre>
</div>
</p>
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