<html>
<head>
<base href="http://fiji.sc/bugzilla/" />
</head>
<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - current build vanishes image after 'run(Add Slice)'"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=917">917</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>current build vanishes image after 'run(Add Slice)'
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>vbindoka@bsd.uchicago.edu
</td>
</tr>
<tr>
<th>CC</th>
<td>vbindoka@bsd.uchicago.edu
</td>
</tr></table>
<p>
<div>
<pre>I set a counter to add a slice every XX frames of analysis. [long macro code]
When FIJI hits the point to add the slice, the image vanishes, though it's
listed in the MENUBAR windows listing. It can't be made visible. Trying to
kill FIJI will ask if the image should be saved, so it seems to exist
somewhere!
I suspect this is reversion of the phantom windows bug, or a new twist.
MY CODE WORKS IN ImageJ-1 !
I can send the macro,if desired, requires stack as input.
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: E:\FEB201~1/java/win64/jdk1.6.0_24//jre
imagej.dir => E:\FEB201~1
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20140825134315)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20140827055124)
Archipelago: <a href="http://sites.imagej.net/Lindsey/">http://sites.imagej.net/Lindsey/</a> (last check:20140804164638)
Bio-Formats: <a href="http://sites.imagej.net/Bio-Formats/">http://sites.imagej.net/Bio-Formats/</a> (last check:20140825202638)
BioVoxxel: <a href="http://sites.imagej.net/BioVoxxel/">http://sites.imagej.net/BioVoxxel/</a> (last check:20140819150502)
GDSC-SMLM: <a href="http://sites.imagej.net/GDSC-SMLM/">http://sites.imagej.net/GDSC-SMLM/</a> (last check:20140819094413)
OpenSPIM: <a href="http://openspim.org/update/">http://openspim.org/update/</a> (last check:20140630085101)
Stowers: <a href="http://research.stowers.org/imagejplugins/updates/">http://research.stowers.org/imagejplugins/updates/</a> (last
check:20140805104656)
Files not up-to-date:
6d337b7a (LOCAL_ONLY) 20140730142734 plugins/Accurate_Gaussian_Blur.class
6e9d50db (LOCAL_ONLY) 20140320051924 plugins/Adjustable_Watershed.class
12ec0761 (LOCAL_ONLY) 20120224100622 plugins/Align_RGB_planes.class
f88d051b (LOCAL_ONLY) 20140730154443 plugins/Align_Slice.class
55de57f2 (LOCAL_ONLY) 20050408121420 plugins/DecCredits$1.class
66a64476 (LOCAL_ONLY) 20050408121420 plugins/DecCredits.class
fd4ce3cd (LOCAL_ONLY) 20050408103628 plugins/DeconvolutionFFT.class
8d9bdfa0 (LOCAL_ONLY) 20090703162900
plugins/DeconvolutionLab/DeconvolutionLab_.jar
8866a3cd (LOCAL_ONLY) 20050408103628 plugins/DeconvolutionSolution.class
ce989b93 (LOCAL_ONLY) 20050408103628 plugins/DeconvolutionWavelets.class
13072662 (LOCAL_ONLY) 20050408121420 plugins/Deconvolution_.class
11326750 (LOCAL_ONLY) 20050408103628 plugins/FFT1D.class
18f23277 (LOCAL_ONLY) 20050408103628 plugins/FourierSpace.class
71b76f0a (LOCAL_ONLY) 20140702072831 plugins/Frac_Lac.jar
15a0aac2 (LOCAL_ONLY) 20050408150536 plugins/GibsonPSF.class
52861b7c (LOCAL_ONLY) 20050408150244 plugins/GibsonPSFF.class
f481dc68 (LOCAL_ONLY) 20120817074900 plugins/Hybrid_2D_Filters.class
6b2de3e5 (LOCAL_ONLY) 20120817084143 plugins/Hybrid_3D_Filters.class
e9cb6eb7 (LOCAL_ONLY) 20140811043831 plugins/Image_CorrelationJ_1o.class
d27e0bc5 (LOCAL_ONLY) 20140501133448
plugins/Intensity_Correlation_Analysis2.class
71ae5c42 (LOCAL_ONLY) 20140509130342 plugins/KalmanOpenStackFilter_.class
44f1acfa (LOCAL_ONLY) 20121128135145 plugins/Mexican_Hat_Filter.class
d84cc2bb (LOCAL_ONLY) 20121012091604 plugins/Morphology/Add_Borders.class
5cccefae (LOCAL_ONLY) 20121012091606 plugins/Morphology/AnnularClosing.txt
763870ef (LOCAL_ONLY) 20121012091604 plugins/Morphology/AnnularDilation.txt
5d777e5e (LOCAL_ONLY) 20121012091604
plugins/Morphology/BinaryConditionalDilate_.class
6cfae168 (LOCAL_ONLY) 20121012091606
plugins/Morphology/BinaryConditionalErode_.class
877be8e6 (LOCAL_ONLY) 20121012091606
plugins/Morphology/BinaryConnectivity_.class
ebe4d9b0 (LOCAL_ONLY) 20121012091606
plugins/Morphology/BinaryDilateNoMerge4_.class
65b35fcd (LOCAL_ONLY) 20121012091606
plugins/Morphology/BinaryDilateNoMerge8_.class
da5dc033 (LOCAL_ONLY) 20121012091604 plugins/Morphology/BinaryDilateTest.txt
fe9208a2 (LOCAL_ONLY) 20121012091605 plugins/Morphology/BinaryDilate_.class
9f2b4ef9 (LOCAL_ONLY) 20121012091604 plugins/Morphology/BinaryErodeTest.txt
b38e2aa0 (LOCAL_ONLY) 20121012091605 plugins/Morphology/BinaryErode_.class
3f39caaf (LOCAL_ONLY) 20121012091605
plugins/Morphology/BinaryFilterReconstruct.txt
76eb6799 (LOCAL_ONLY) 20121012091605
plugins/Morphology/BinaryFilterReconstruct_.class
6a2c8b7a (LOCAL_ONLY) 20121012091606
plugins/Morphology/BinaryGeodesicDilateNoMerge8_.class
14c67860 (LOCAL_ONLY) 20121012091605
plugins/Morphology/BinaryHitOrMiss_.class
33b507c2 (LOCAL_ONLY) 20121012091604
plugins/Morphology/BinaryKillBorders_.class
4204c1c6 (LOCAL_ONLY) 20121012091606 plugins/Morphology/BinaryLabel8_.class
d3c84f8c (LOCAL_ONLY) 20121012091606 plugins/Morphology/BinaryLabelMacro.txt
59e1afe9 (LOCAL_ONLY) 20121012091606 plugins/Morphology/BinaryLabel_.class
36e4a042 (LOCAL_ONLY) 20121012091605 plugins/Morphology/BinaryPrune.txt
c8c66f92 (LOCAL_ONLY) 20121012091605
plugins/Morphology/BinaryReconstruct_.class
3ff298c7 (LOCAL_ONLY) 20121012091606 plugins/Morphology/BinaryThick2_.class
b73f68f4 (LOCAL_ONLY) 20121012091605 plugins/Morphology/BinaryThick_.class
2c4c813e (LOCAL_ONLY) 20121012091606 plugins/Morphology/BinaryThin2_.class
d8a5d664 (LOCAL_ONLY) 20121012091604 plugins/Morphology/BinaryThin_.class
3e83cc61 (LOCAL_ONLY) 20121012091605 plugins/Morphology/Boundary4.txt
9d64440e (LOCAL_ONLY) 20121012091604 plugins/Morphology/Boundary8_.txt
e9fc745d (LOCAL_ONLY) 20121012091606
plugins/Morphology/Catalogue_Particles.txt
4d0095a2 (LOCAL_ONLY) 20121012091605
plugins/Morphology/Classify_Particles.class
f53a898e (LOCAL_ONLY) 20121012091604
plugins/Morphology/CloseByReconstructionTopHat.txt
2c7f38f5 (LOCAL_ONLY) 20121012091606
plugins/Morphology/CloseByReconstruction_.txt
1c33105a (LOCAL_ONLY) 20121012091605 plugins/Morphology/ConvexHull1.txt
7cb69fdf (LOCAL_ONLY) 20121012091605 plugins/Morphology/ConvexHull2.txt
b19cb415 (LOCAL_ONLY) 20121012091604 plugins/Morphology/ConvexHull3.txt
bd22187f (LOCAL_ONLY) 20121012091605 plugins/Morphology/Corners.txt
55c709bf (LOCAL_ONLY) 20121012091604
plugins/Morphology/Correlate_Results.class
d463ee86 (LOCAL_ONLY) 20121012091605 plugins/Morphology/Delete_ZeroArea.txt
8df2eb76 (LOCAL_ONLY) 20121012091604 plugins/Morphology/Diagonal8to4.txt
61193e21 (LOCAL_ONLY) 20121012091605 plugins/Morphology/Domes_.class
e428a0f5 (LOCAL_ONLY) 20121012091604 plugins/Morphology/Domes_stack.txt
1be944ae (LOCAL_ONLY) 20121012091606 plugins/Morphology/DoubleWaterfall.txt
925d3d8c (LOCAL_ONLY) 20121012091605 plugins/Morphology/DrawBoundingBox.txt
63c4cd27 (LOCAL_ONLY) 20121012091605
plugins/Morphology/DrawBoundingCircle.txt
b97f945a (LOCAL_ONLY) 20121012091606 plugins/Morphology/DrawConvexHulls.txt
2adcfe94 (LOCAL_ONLY) 20121012091605 plugins/Morphology/DrawFeret&Breadth.txt
b60f4365 (LOCAL_ONLY) 20121012091605 plugins/Morphology/DrawMinR&MaxR.txt
288ace7a (LOCAL_ONLY) 20121012091605 plugins/Morphology/EDM_16bits.txt
71d10273 (LOCAL_ONLY) 20121012091605 plugins/Morphology/Euler.txt
63757672 (LOCAL_ONLY) 20121012091604 plugins/Morphology/Extended_Maxima.txt
285e4c16 (LOCAL_ONLY) 20121012091606 plugins/Morphology/Extended_Minima.txt
2b80b381 (LOCAL_ONLY) 20121012091605
plugins/Morphology/FillHolesReconstruct.txt
205b6052 (LOCAL_ONLY) 20121012091604 plugins/Morphology/Fill_Border_Holes.txt
54d7ef21 (LOCAL_ONLY) 20121012091604
plugins/Morphology/Fill_Greyscale_Holes.txt
75041650 (LOCAL_ONLY) 20121012091604
plugins/Morphology/GreyBlackTopHatByReconstruction_.txt
6f716dcc (LOCAL_ONLY) 20121012091605
plugins/Morphology/GreyWhiteTopHatByReconstruction_.txt
579b5383 (LOCAL_ONLY) 20121012091605
plugins/Morphology/GreyscaleCentreFilter.txt
ee023f37 (LOCAL_ONLY) 20121012114130
plugins/Morphology/GreyscaleDilate_.class
965f297a (LOCAL_ONLY) 20121012091605 plugins/Morphology/GreyscaleErode_.class
0a50379d (LOCAL_ONLY) 20121012091605
plugins/Morphology/GreyscaleKillBorders.txt
d3047959 (LOCAL_ONLY) 20121012091604
plugins/Morphology/GreyscaleProperAutomedian.txt
b4d94111 (LOCAL_ONLY) 20121012091605
plugins/Morphology/GreyscaleProperClose.txt
44d81a95 (LOCAL_ONLY) 20121012091604
plugins/Morphology/GreyscaleProperOpen.txt
9aadbae0 (LOCAL_ONLY) 20121012091604
plugins/Morphology/GreyscaleReconstruct_.class
4d7e6035 (LOCAL_ONLY) 20121012091604 plugins/Morphology/GreyscaleTopHat.txt
cb2dc22a (LOCAL_ONLY) 20121012091606 plugins/Morphology/GreyscaleWell.txt
282495a6 (LOCAL_ONLY) 20121012091604 plugins/Morphology/H-break.txt
a73d2279 (LOCAL_ONLY) 20121012091605 plugins/Morphology/HMaxima_Transform.txt
f1c1b630 (LOCAL_ONLY) 20121012091606 plugins/Morphology/HMinima_Transform.txt
af3183b2 (LOCAL_ONLY) 20121012091606 plugins/Morphology/Hole_Counter.txt
930ee9e1 (LOCAL_ONLY) 20121012091605 plugins/Morphology/HomotopicMarking.txt
3429c4f3 (LOCAL_ONLY) 20121012091604 plugins/Morphology/Hysteresis.txt
2511df4c (LOCAL_ONLY) 20121012091606 plugins/Morphology/Impose_Minimum.txt
6be72748 (LOCAL_ONLY) 20121012091604 plugins/Morphology/Influence_Zones.txt
5859277c (LOCAL_ONLY) 20121012091604
plugins/Morphology/KeepLargestParticle.txt
559e475f (LOCAL_ONLY) 20121012091604
plugins/Morphology/KeepLargestParticlePixels_.txt
4605ad0a (LOCAL_ONLY) 20121012091605
plugins/Morphology/KeepParticlesInRange.txt
b46b2695 (LOCAL_ONLY) 20121012091606 plugins/Morphology/Lines8_.class
43259a0b (LOCAL_ONLY) 20121012091605 plugins/Morphology/LocalMaxima.txt
c0207001 (LOCAL_ONLY) 20121012091605 plugins/Morphology/LocalMinMax.txt
b2139bd8 (LOCAL_ONLY) 20121012091605 plugins/Morphology/LocalMinima.txt
05f0502d (LOCAL_ONLY) 20121012091605 plugins/Morphology/MCentroids.txt
b3ea5e05 (LOCAL_ONLY) 20121012091605 plugins/Morphology/MinimaDynamic.txt
57e4bbaa (LOCAL_ONLY) 20121012091605
plugins/Morphology/Morphological2Derivative1.txt
35b51e7e (LOCAL_ONLY) 20121012091604
plugins/Morphology/Morphological2Derivative2.txt
ef809632 (LOCAL_ONLY) 20121012091605
plugins/Morphology/Morphological2Derivative3.txt
73902be6 (LOCAL_ONLY) 20121012091605
plugins/Morphology/MorphologicalContrastTopHat.txt
86d43a13 (LOCAL_ONLY) 20121012091605
plugins/Morphology/MorphologicalExternalGradient.txt
66d657f2 (LOCAL_ONLY) 20121012091605
plugins/Morphology/MorphologicalGradient3.txt
2cd67873 (LOCAL_ONLY) 20121012091604
plugins/Morphology/MorphologicalGradientBeucher.txt
b141cc35 (LOCAL_ONLY) 20121012091605
plugins/Morphology/MorphologicalInternalGradient.txt
babf8d91 (LOCAL_ONLY) 20121012091605
plugins/Morphology/MorphologicalSharpGradient.txt
7e05ec43 (LOCAL_ONLY) 20121012091605
plugins/Morphology/MorphologicalSmoothing1.txt
df30c851 (LOCAL_ONLY) 20121012091604
plugins/Morphology/MorphologicalSmoothing2.txt
b4232d82 (LOCAL_ONLY) 20121012091604
plugins/Morphology/Morphological_Clustering.txt
c4024220 (LOCAL_ONLY) 20121012091604 plugins/Morphology/Morphological_PCA.txt
44b58573 (LOCAL_ONLY) 20121012091604
plugins/Morphology/Morphological_SelfDualCentre.txt
d20caeeb (LOCAL_ONLY) 20121012091604
plugins/Morphology/Morphological_contrast.txt
c40dcb5d (LOCAL_ONLY) 20121012091606
plugins/Morphology/MultiscaleGradient.txt
7fa60ae6 (LOCAL_ONLY) 20121012091606 plugins/Morphology/NumberParticles8_.txt
cd6cf4de (LOCAL_ONLY) 20121012091606
plugins/Morphology/OpenByReconstructionTopHat.txt
5f844fa9 (LOCAL_ONLY) 20121012091606
plugins/Morphology/OpenByReconstruction_.txt
8fdf1b15 (LOCAL_ONLY) 20121012091605 plugins/Morphology/Parameter_Matrix.txt
65c22a1e (LOCAL_ONLY) 20121012091605 plugins/Morphology/ParticleHoleArea.txt
9a713d79 (LOCAL_ONLY) 20121012091605
plugins/Morphology/ParticleHoleNumber.txt
9c0a7763 (LOCAL_ONLY) 20121012091606 plugins/Morphology/Particle_Data_Map.txt
85b99ff0 (LOCAL_ONLY) 20121012091605 plugins/Morphology/Particles4_.class
583118b2 (LOCAL_ONLY) 20121012091604 plugins/Morphology/Particles8_.class
ac25812c (LOCAL_ONLY) 20121012091604
plugins/Morphology/Plot_BivariateGraphs.txt
e8ea53cb (LOCAL_ONLY) 20121012091605 plugins/Morphology/Plot_Histograms.txt
ce077644 (LOCAL_ONLY) 20121012091605 plugins/Morphology/Prune1.txt
c4126534 (LOCAL_ONLY) 20121012091604 plugins/Morphology/PruneAll.txt
916ac5a4 (LOCAL_ONLY) 20121012091604 plugins/Morphology/RegionalMinMax.txt
3dcf6fa2 (LOCAL_ONLY) 20121012091604 plugins/Morphology/Regional_Maxima.txt
bc61499e (LOCAL_ONLY) 20121012091605 plugins/Morphology/Regional_Minima.txt
358d5270 (LOCAL_ONLY) 20121012091606
plugins/Morphology/SelfComplementaryTopHat.txt
36e7e0b4 (LOCAL_ONLY) 20121012091604
plugins/Morphology/SelfDualReconstruction_.txt
64886ac9 (LOCAL_ONLY) 20121012091605 plugins/Morphology/Skeleton1.txt
64fa451e (LOCAL_ONLY) 20121012091604 plugins/Morphology/Skeleton2.txt
809a6770 (LOCAL_ONLY) 20121012091606 plugins/Morphology/Skeleton3.txt
16447730 (LOCAL_ONLY) 20121012091605 plugins/Morphology/Skeleton4.txt
b2242712 (LOCAL_ONLY) 20121012091606 plugins/Morphology/SkeletonFiltering.txt
5d0400a0 (LOCAL_ONLY) 20121012091606 plugins/Morphology/Summarize_Results.txt
ab0b29c3 (LOCAL_ONLY) 20121012091605
plugins/Morphology/Thin_Results_Table.txt
090f96c1 (LOCAL_ONLY) 20121012091605 plugins/Morphology/UnbiasedCounting.txt
fecf6a46 (LOCAL_ONLY) 20121012091604
plugins/Morphology/UnbiasedParticleArea.txt
19a9433c (LOCAL_ONLY) 20121012091605
plugins/Morphology/Viscous_Geodesic_Reconstruction.txt
21927175 (LOCAL_ONLY) 20140808090713 plugins/PIV_.jar
b3b13b1f (LOCAL_ONLY) 20050408150244 plugins/PSFCredits$1.class
cb99705d (LOCAL_ONLY) 20050408150244 plugins/PSFCredits.class
de90b917 (LOCAL_ONLY) 20050408150536 plugins/PSFCreditsG$1.class
e33950eb (LOCAL_ONLY) 20050408150536 plugins/PSFCreditsG.class
5a3abd78 (LOCAL_ONLY) 20050408150536 plugins/PSF_Gibson_.class
65b190f7 (LOCAL_ONLY) 20121002063426 plugins/PSF_Simple_.class
0c89ccf5 (LOCAL_ONLY) 20140507100709 plugins/PoissonNMF_.jar
12289f6e (LOCAL_ONLY) 20110916093010 plugins/PureDenoise_.jar
0eb97953 (LOCAL_ONLY) 20120921142744 plugins/RGB_Profiler.class
a75d3b5e (LOCAL_ONLY) 20140416070711 plugins/Shape_Descriptor1u.class
69b16199 (LOCAL_ONLY) 20050408103628 plugins/WaveDaub4.class
f0990b22 (LOCAL_ONLY) 20050408103628 plugins/WaveDaub4Filter.class
27901023 (LOCAL_ONLY) 20050408152652 plugins/Wavelet_Deconvolution_.class
b2afde18 (LOCAL_ONLY) 20140325152012 plugins/cell_counter.jar
71331805 (LOCAL_ONLY) 20140314082430 plugins/jacop_.jar
16e7eed3 (LOCAL_ONLY) 20140228132323 plugins/jars/Compiler.jar
9bbfb280 (LOCAL_ONLY) 20140225135257 plugins/octane2_.jar
217563b6 (LOCAL_ONLY) 20140808091558 plugins/win_64bit/LICENSE_javacv.txt
8f96d1bf (LOCAL_ONLY) 20140808091559
plugins/win_64bit/ffmpeg-20130915-git-7ac6c63-windows-x86_64.jar
ad41ea93 (LOCAL_ONLY) 20140808091559 plugins/win_64bit/javacpp.jar
d460641f (LOCAL_ONLY) 20140808091559
plugins/win_64bit/javacv-windows-x86_64.jar
922d91fd (LOCAL_ONLY) 20140808091601 plugins/win_64bit/javacv.jar
cdbfe3b8 (LOCAL_ONLY) 20140808091601 plugins/win_64bit/license.txt
db4cd450 (LOCAL_ONLY) 20140808091602
plugins/win_64bit/opencv-2.4.6.0-windows-x86_64.jar</pre>
</div>
</p>
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