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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - *Image > Overlay > Flatten* fails in Composite Mode"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=912">912</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>*Image > Overlay > Flatten* fails in Composite Mode
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
<tr>
<th>OS</th>
<td>Mac OS
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>jan.eglinger@uni-duesseldorf.de
</td>
</tr>
<tr>
<th>CC</th>
<td>jan.eglinger@uni-duesseldorf.de
</td>
</tr></table>
<p>
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<pre>Running the following macro:
run("Fluorescent Cells (400K)");
run("Flatten");
will throw the exception pasted below. The exception is thrown only if the
current image is in *Composite* mode, and independent of an overlay or ROI
being displayed.
********************
(Fiji Is Just) ImageJ 2.0.0-rc-14/1.49f; Java 1.6.0_65 [64-bit]; Mac OS X
10.9.4; 26MB of 4491MB (<1%)
java.lang.IllegalArgumentException: DirectColorModel required
at ij.process.ColorProcessor.setColorModel(ColorProcessor.java:101)
at ij.process.ImageProcessor.setLut(ImageProcessor.java:184)
at ij.CompositeImage.setup(CompositeImage.java:131)
at ij.CompositeImage.reset(CompositeImage.java:527)
at ij.ImagePlus.setStack(ImagePlus.java:672)
at ij.ImagePlus.setImage(ImagePlus.java:521)
at
ij.plugin.RGBStackConverter.compositeImageToRGB(RGBStackConverter.java:176)
at ij.plugin.RGBStackConverter.compositeToRGB(RGBStackConverter.java:76)
at ij.plugin.RGBStackConverter.run(RGBStackConverter.java:38)
at ij.plugin.RGBStackConverter.convertToRGB(RGBStackConverter.java:63)
at ij.process.StackConverter.convertToRGB(StackConverter.java:171)
at ij.process.ImageConverter.convertToRGB(ImageConverter.java:85)
at ij.ImagePlus.flattenStack(ImagePlus.java:2420)
at ij.plugin.OverlayCommands.flattenStack(OverlayCommands.java:276)
at ij.plugin.OverlayCommands.flatten(OverlayCommands.java:261)
at ij.plugin.OverlayCommands.run(OverlayCommands.java:34)
at ij.IJ.runPlugIn(IJ.java:172)
at ij.Executer.runCommand(Executer.java:131)
at ij.Executer.run(Executer.java:61)
at java.lang.Thread.run(Thread.java:695)
********************
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.9.4
java.version => 1.6.0_65
java.vendor => Apple Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_65-b14-462-11M4609
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 20.65-b04-462
java.vm.vendor => Apple Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: null
imagej.dir => /Users/eglinger/Fiji-debug/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20140822175924)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20140821133247)</pre>
</div>
</p>
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