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<body><span class="vcard"><a class="email" href="mailto:ctrueden@wisc.edu" title="Curtis Rueden <ctrueden@wisc.edu>"> <span class="fn">Curtis Rueden</span></a>
</span> changed
<a class="bz_bug_link
bz_status_CONFIRMED "
title="CONFIRMED - Fiji cannot open stacks"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=901">bug 901</a>
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<table border="1" cellspacing="0" cellpadding="8">
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<th>What</th>
<th>Removed</th>
<th>Added</th>
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<td style="text-align:right;">Status</td>
<td>NEW
</td>
<td>CONFIRMED
</td>
</tr>
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<td style="text-align:right;">CC</td>
<td>
</td>
<td>ctrueden@wisc.edu
</td>
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<b><a class="bz_bug_link
bz_status_CONFIRMED "
title="CONFIRMED - Fiji cannot open stacks"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=901#c2">Comment # 2</a>
on <a class="bz_bug_link
bz_status_CONFIRMED "
title="CONFIRMED - Fiji cannot open stacks"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=901">bug 901</a>
from <span class="vcard"><a class="email" href="mailto:ctrueden@wisc.edu" title="Curtis Rueden <ctrueden@wisc.edu>"> <span class="fn">Curtis Rueden</span></a>
</span></b>
<pre>No need to upload sample data; we already have MM datasets demonstrating this
issue, which I just confirmed still occurs with the most recent version of Fiji
with SCIFIO enabled.
Relevant stack trace is:
java.lang.ArrayIndexOutOfBoundsException: 2
at
io.scif.formats.MicromanagerFormat$Position.getFile(MicromanagerFormat.java:870)
at
io.scif.formats.MicromanagerFormat$Reader.openPlane(MicromanagerFormat.java:757)
at
io.scif.formats.MicromanagerFormat$Reader.openPlane(MicromanagerFormat.java:721)
at io.scif.AbstractReader.openPlane(AbstractReader.java:167)
at io.scif.filters.ChannelFiller.openPlane(ChannelFiller.java:170)
at io.scif.filters.ChannelFiller.openPlane(ChannelFiller.java:151)
at io.scif.filters.PlaneSeparator.openPlane(PlaneSeparator.java:297)
at io.scif.filters.PlaneSeparator.openPlane(PlaneSeparator.java:208)
at
io.scif.filters.AbstractReaderFilter.openPlane(AbstractReaderFilter.java:225)
at
io.scif.filters.AbstractReaderFilter.openPlane(AbstractReaderFilter.java:191)
at io.scif.img.ImgOpener.read(ImgOpener.java:808)
at io.scif.img.ImgOpener.read(ImgOpener.java:793)
at io.scif.img.ImgOpener.read(ImgOpener.java:793)
at io.scif.img.ImgOpener.read(ImgOpener.java:775)
at io.scif.img.ImgOpener.readPlanes(ImgOpener.java:761)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:362)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:257)
at io.scif.img.ImgOpener.openImgs(ImgOpener.java:145)
at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:266)
at net.imagej.DefaultDatasetService.open(DefaultDatasetService.java:250)
at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:78)
at net.imagej.io.DatasetIOPlugin.open(DatasetIOPlugin.java:50)
at
net.imagej.legacy.plugin.DefaultLegacyOpener.open(DefaultLegacyOpener.java:136)
at
net.imagej.legacy.DefaultLegacyHooks.interceptFileOpen(DefaultLegacyHooks.java:327)
at
net.imagej.legacy.DefaultLegacyHooks.interceptRunPlugIn(DefaultLegacyHooks.java:150)
Using the dataset in our data repository's micromanager/colin folder.</pre>
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