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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Stack Tools convert composite to interleaved"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=903">903</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Stack Tools convert composite to interleaved
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
<tr>
<th>OS</th>
<td>Mac OS
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>glenmac@uw.edu
</td>
</tr>
<tr>
<th>CC</th>
<td>glenmac@uw.edu
</td>
</tr></table>
<p>
<div>
<pre>If I apply Image>Stacks>Tools, Slice Keeper or Slice Remover, to a
multi-channel 16-bit Composite stack, the resulting stack is converted to a
simple 16-bit grayscale stack and interleaves the channels.
Don't recall this happening in the past. also occurs with a MacBookPro.
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.9.4
java.version => 1.6.0_65
java.vendor => Apple Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_65-b14-462-11M4609
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 20.65-b04-462
java.vm.vendor => Apple Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: UP_TO_DATE
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: null
imagej.dir => /Applications/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20140814090445)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20140813115223)
3D ImageJ Suite: <a href="http://sites.imagej.net/Tboudier/">http://sites.imagej.net/Tboudier/</a> (last check:20140603230506)
BioVoxxel: <a href="http://sites.imagej.net/BioVoxxel/">http://sites.imagej.net/BioVoxxel/</a> (last check:20140811053030)
FFMPEG: <a href="http://fiji.sc/~schindelin/ffmpeg-plugins/">http://fiji.sc/~schindelin/ffmpeg-plugins/</a> (last check:20130606082449)
Morphology: <a href="http://sites.imagej.net/Landini/">http://sites.imagej.net/Landini/</a> (last check:20140723075558)
PTBIOP: <a href="http://biop.epfl.ch/Fiji-Update/">http://biop.epfl.ch/Fiji-Update/</a> (last check:20140730023856)
ScientiFig: <a href="http://sites.imagej.net/Aigouy/">http://sites.imagej.net/Aigouy/</a> (last check:20140812082844)
SCIFIO-dev: <a href="http://sites.imagej.net/SCIFIO/">http://sites.imagej.net/SCIFIO/</a> (last check:20140801104207)
Stowers: <a href="http://research.stowers.org/imagejplugins/updates/">http://research.stowers.org/imagejplugins/updates/</a> (last
check:20140805084656)
Bio-Formats daily builds: <a href="http://sites.imagej.net/Bio-Formats/">http://sites.imagej.net/Bio-Formats/</a> (last
check:20140813182633)
Files not up-to-date:
07f4044a (LOCAL_ONLY) 20140612110153 macros/CLAHE stack.ijm
9d962521 (LOCAL_ONLY) 20120618120603 macros/PIMP_2f-3ivariant.ijm
b69e6838 (LOCAL_ONLY) 20120622105927 macros/PIMP_2g.ijm
eb509ed0 (LOCAL_ONLY) 20120717095350 macros/PIMP_2gbgsubtraction.ijm
e56187b3 (LOCAL_ONLY) 20120710174431 macros/PIMP_2gtests.ijm
41baa729 (LOCAL_ONLY) 20120717105146 macros/PIMP_2h.ijm
c46ef207 (LOCAL_ONLY) 20120717110725 macros/PIMP_2i.ijm
22596c68 (LOCAL_ONLY) 20120615161654
macros/PIMP_finalGHMarrays2e3DguassThold.ijm
7fb3cc04 (LOCAL_ONLY) 20120615161647
macros/PIMP_finalGHMarrays2e3Dguassian.ijm
87255328 (LOCAL_ONLY) 20140206150200 macros/delete2slices.ijm
74f75823 (LOCAL_ONLY) 20120719100435 macros/toolsets/3DClusterAnalysis.ijm
0fe955a3 (LOCAL_ONLY) 20120305144333 macros/toolsets/Andrew Macro4b.ijm
6cc0aae2 (LOCAL_ONLY) 20110901171448 macros/toolsets/Arminda timelapse macro
3.8b.ijm
f4074bbb (LOCAL_ONLY) 20120702084321 macros/toolsets/BPCounting3g.ijm
8e86396d (LOCAL_ONLY) 20131018145317 macros/toolsets/FWHM.ijm
2fe75fec (LOCAL_ONLY) 20131107171559 macros/toolsets/FWHM3.ijm
c68a09eb (LOCAL_ONLY) 20120911102147 macros/toolsets/Fill ROI Macro.ijm
ead280e3 (LOCAL_ONLY) 20120808153016 macros/toolsets/GTTR Segmentation3.ijm
d198e5e7 (LOCAL_ONLY) 20100916121922
macros/toolsets/Import_Channel_Order3.8a.txt
696ba2a6 (LOCAL_ONLY) 20131002104159
macros/toolsets/Import_Montage_Stacks3.8a.txt
72ff0312 (LOCAL_ONLY) 20140814161438 macros/toolsets/Make_Composite.ijm
17d1aba0 (LOCAL_ONLY) 20140404113537 macros/toolsets/Merge HuPro
Quadrants_3b.ijm
01179b26 (LOCAL_ONLY) 20120913130241 macros/toolsets/Multiply.ijm
4651471a (LOCAL_ONLY) 20121116153429 macros/toolsets/PIMP_3_Batch.ijm
0c5c4a4c (LOCAL_ONLY) 20121116153510 macros/toolsets/PIMP_3_Single file.ijm
4b5104ee (LOCAL_ONLY) 20120627100227 macros/toolsets/Placenta macro3.ijm
24c3ebb4 (LOCAL_ONLY) 20131218123203 macros/toolsets/Scan macro.ijm
5cf51025 (LOCAL_ONLY) 20140625172146 macros/toolsets/Stereology_grid2_4.ijm
d45b5703 (LOCAL_ONLY) 20140625172158 macros/toolsets/Stereology_grid2_5.ijm
232bca5e (LOCAL_ONLY) 20120910121056 macros/toolsets/Temporal Time
Encoder.ijm
3d17a094 (LOCAL_ONLY) 20140115144252 macros/toolsets/Utricle_RGB_merge2_2.ijm
618286ae (LOCAL_ONLY) 20121115152953 macros/toolsets/batchStackreg.ijm
d53a8d48 (LOCAL_ONLY) 20120730154750 macros/toolsets/drift3b.ijm
6cedb193 (LOCAL_ONLY) 20120730162148 macros/toolsets/drift3c.ijm
fc424882 (LOCAL_ONLY) 20120305133512 macros/toolsets/macro development/Andrew
Macro4a.ijm
0b91930b (LOCAL_ONLY) 20111007164331 macros/toolsets/macro
development/Arminda 3.98test.ijm
07f111f8 (LOCAL_ONLY) 20120620161839 macros/toolsets/macro
development/FWHM.ijm
607b8de2 (LOCAL_ONLY) 20110928161804 macros/toolsets/macro development/Import
Channel Order3.98.ijm
891da2e3 (LOCAL_ONLY) 20110831161129 macros/toolsets/macro
development/Import_Channel_Order3.8atlapse.txt
c1e7d84a (LOCAL_ONLY) 20110831163521 macros/toolsets/macro
development/Import_Channel_Order3.8btlapse.txt
3fedd17e (LOCAL_ONLY) 20110901165057 macros/toolsets/macro
development/Import_Channel_Order3.8btlapse.txt.ijm
6ddde9e7 (LOCAL_ONLY) 20110124183506 macros/toolsets/macro
development/Import_Channel_Order3.8f.txt
76c91a2c (LOCAL_ONLY) 20120529122545 macros/toolsets/macro
development/PIMP_final.ijm
45be256a (LOCAL_ONLY) 20120601113233 macros/toolsets/macro
development/PIMP_finalGHMarrays2b.ijm
de11be1e (LOCAL_ONLY) 20120403145549 macros/toolsets/macro development/Scale
CellVizio Tiff stack.ijm
ee6d3193 (LOCAL_ONLY) 20120221135146 macros/toolsets/macro
development/testscale.ijm
83d10173 (LOCAL_ONLY) 20120712161724 macros/toolsets/plot coordinates.ijm
d1a3a016 (LOCAL_ONLY) 20120712161713 macros/toolsets/plotresults.ijm
73c35d52 (LOCAL_ONLY) 20121002143805 macros/toolsets/testbatchopen.ijm
c1dcbd92 (LOCAL_ONLY) 20121008113151 macros/toolsets/transition stacks.ijm
5a8a6e22 (LOCAL_ONLY) 20120821154843 macros/toolsets/waterjet2.ijm
301245dd (LOCAL_ONLY) 20120822090138 macros/toolsets/waterjet2deltaf.ijm
81fecfd4 (LOCAL_ONLY) 20120822172438 macros/toolsets/waterjet3.ijm
d054d71f (LOCAL_ONLY) 20120717163446 macros/use copyand restore ROI.ijm
bd7bc5d1 (LOCAL_ONLY) 20140604192402 plugins/ActionBar/Shared
Bars/BIOP_MultiManualSelect.ijm
c271b415 (LOCAL_ONLY) 20140604192403 plugins/ActionBar/Shared
Bars/BIOP_PSF_Quality.ijm
08afb731 (LOCAL_ONLY) 20140411093521 plugins/ActionBar/Shared
Bars/BIOP_VSI_Reader.ijm
4edb1d6f (LOCAL_ONLY) 20140604192404 plugins/ActionBar/Shared
Bars/Common_Tools.ijm
db280c9c (LOCAL_ONLY) 20140404162924 plugins/ActionBar/Shared
Bars/JaCoP_Tools.ijm
c0f5f8c9 (LOCAL_ONLY) 20140618131422 plugins/BoneJ_.jar
849a4e62 (LOCAL_ONLY) 20140227163214 plugins/ExtendedDepthField.txt
d35ea3fc (LOCAL_ONLY) 20140709121718 plugins/New_.py
6b8a0ed5 (LOCAL_ONLY) 20140411093001 plugins/action_bar201d.jar
b2afde18 (LOCAL_ONLY) 20140115161834 plugins/cell_counter.jar
71331805 (LOCAL_ONLY) 20140225164744 plugins/jacop_.jar
9f4f8151 (LOCAL_ONLY) 20140724124554 plugins/jars/jython-2.5.2.jar</pre>
</div>
</p>
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