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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
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<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Importing of Image Sequences VERY slow"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=895">895</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Importing of Image Sequences VERY slow
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
<tr>
<th>OS</th>
<td>Mac OS
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>s.j.carr@qmul.ac.uk
</td>
</tr>
<tr>
<th>CC</th>
<td>s.j.carr@qmul.ac.uk
</td>
</tr></table>
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<div>
<pre>I'm not sure this is a bug, but it is certainly something that has really
compromised my work recently!
Having recently updated FIJI/ImageJ, I have noticed that the process of
importing image sequences has become really, really slow. Previously, it would
take around 15 seconds to import a 2GB image sequence of 1024 tiff files, but
now, it takes many minutes.
I notice that when ImageJ is importing the stack, there is an additional
reporting in the menu bar that the software is initializinfg the volume from
which the sequence is being imported for each tiff file, which was certainly
not evident in the previous versions of FIJI/ImageJ. I note that importing a
RAW version of the same volume is as quick as usual. I have uninstalled and
re-installed a fresh build of FIJI, but the problem is still there, and I have
experienced the same problem on two different iMacs.
Information about your version of Java:
os.arch => x86_64
os.name => Mac OS X
os.version => 10.9.4
java.version => 1.6.0_65
java.vendor => Apple Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_65-b14-462-11M4609
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 20.65-b04-462
java.vm.vendor => Apple Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => null
file.separator => /
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: null
imagej.dir => /Applications/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20140810132118)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20140808190226)
Files not up-to-date:
71f2da38 (LOCAL_ONLY) 20140812062714 plugins/BoneJ_.jar
a1e32b23 (LOCAL_ONLY) 20140812062841
plugins/Compute_Curvatures$FloatArray.class
3ccf02f5 (LOCAL_ONLY) 20140812062853
plugins/Compute_Curvatures$FloatArray2D.class
81183bf9 (LOCAL_ONLY) 20140812062901
plugins/Compute_Curvatures$FloatArray3D.class
f8c3160f (LOCAL_ONLY) 20140812062832 plugins/Compute_Curvatures.class
d546883b (LOCAL_ONLY) 20140812062814 plugins/jars/Jama-1.0.1.jar
0dfa5070 (LOCAL_ONLY) 20140812062741 plugins/jars/imagescience.jar
199fcd64 (LOCAL_ONLY) 20140812062802 plugins/jars/mcib3d-core.jar
3b5f97ef (LOCAL_ONLY) 20140812062749 plugins/mcib3d_plugins.jar</pre>
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</p>
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