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<head>
<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - tif file does not open"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=878">878</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>tif file does not open
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Linux
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>baigouy@gmail.com
</td>
</tr>
<tr>
<th>CC</th>
<td>baigouy@gmail.com
</td>
</tr></table>
<p>
<div>
<pre>Dear IJ/Scifio (LOCI?) developpers,
I fail to open the image I called 4D_sample.tif (Image originating from a zeiss
mdb confocal series and saved as tif using the current version of FIJI). The
image opens just fine using the life line version of FIJI but does not on the
current version of FIJI. FIJI seems to enter an infinite loop of some kind and
I have to kill the process to quit it. The only message I get before the crash
is:
10:41:11.238 [DrawAndDrop] DEBUG loci.common.NIOByteBufferProvider - Using
mapped byte buffer? false. Hope this helps.
best,
benoit
ps: File>import>bio-formats opens the image just fine but the LUT is incorrect
Information about your version of Java:
os.arch => amd64
os.name => Linux
os.version => 3.13.0-32-generic
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.X11GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => gnome
file.separator => /
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to: /home/benoit/Fiji.app/java/linux-amd64/jdk1.6.0_24//jre
imagej.dir => /home/benoit/Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20140802175300)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20140730210634)
IBMP-CNRS: <a href="http://www-ibmp.u-strasbg.fr/fijiupdates/">http://www-ibmp.u-strasbg.fr/fijiupdates/</a> (last
check:20140526164644)
ScientiFig: <a href="http://sites.imagej.net/Aigouy/">http://sites.imagej.net/Aigouy/</a> (last check:20140711200224)
Files not up-to-date:
a5d02cb7 (LOCAL_ONLY) 20131005162326 plugins/Kymo_graph1001.jar
740a32b3 (LOCAL_ONLY) 20140109112924 plugins/SplittedChannelsMerger_.class
d31ed141 (LOCAL_ONLY) 20131016094131 plugins/Stack_Focuser_.class
188c85ca (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/GraphThemes/BasicTheme.txt
01085dcb (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/GraphThemes/theme3007994286031749119.txt
67db385e (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/JournalStyles/Cell.txt
cc7237c4 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/JournalStyles/Development.txt
5584a6b9 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/JournalStyles/NATUREMETHODS.txt
ba9a3bdc (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/JournalStyles/Nature.txt
9f264c8c (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/JournalStyles/PLOSONE.txt
5be60f41 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/JournalStyles/PowerPoint2010.txt
4434b72a 20140804181524 plugins/Tissue_Analyzer/ScientiFigPrefs.txt
967b726a (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/TA_additions/TA_plugins/Cortex.jar
17d3b815 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/TA_additions/TA_plugins/FlowPlugin.jar
e87dbc68 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/TA_additions/TA_plugins/OptimizedZProjectionPlugin.jar
5a330876 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/TA_additions/TA_plugins/QiyanPlugin.jar
035ccfcf (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/TA_additions/TA_plugins/TA_prefs/-5016441619325897676.txt
50bc25c3 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/TA_additions/TA_plugins/additionalCloneTools.jar
be4da579 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/TA_additions/TA_plugins/cloneRoughness.jar
cae64ab2 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/Tissue_Analyzer.jar
a3f77cd0 (LOCAL_ONLY) 20140805085038 plugins/Tissue_Analyzer/changes.txt
7bf59685 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/compilationDate.txt
0bf38115 (LOCAL_ONLY) 20140805085038 plugins/Tissue_Analyzer/lib/Icons.jar
4164a351 (LOCAL_ONLY) 20140805085038 plugins/Tissue_Analyzer/lib/IconsPA.jar
c3cdf2d0 (LOCAL_ONLY) 20140805085038 plugins/Tissue_Analyzer/lib/REngine.jar
6ba3fcd5 (LOCAL_ONLY) 20140805085038 plugins/Tissue_Analyzer/lib/Rserve.jar
269cc20e (LOCAL_ONLY) 20140805085038 plugins/Tissue_Analyzer/lib/Rsession.jar
694bbee3 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/lib/sqlite-jdbc-3.7.2.jar
3887dab6 (LOCAL_ONLY) 20140805085038 plugins/Tissue_Analyzer/license.txt
397bab67 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/otherLicenses/licenseIcons.txt
0f96dbd0 (LOCAL_ONLY) 20140805085038
plugins/Tissue_Analyzer/otherLicenses/licenseRsession.txt
5f60d96e (LOCAL_ONLY) 20140306085844 plugins/Watershed_.jar</pre>
</div>
</p>
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