[ImageJ-bugs] [Bug 1182] New: 3D Convex Hull plugin uses all available memory and processor but does not complete

bugzilla at fiji.sc bugzilla at fiji.sc
Mon Nov 2 13:26:58 CST 2015


http://fiji.sc/bugzilla/show_bug.cgi?id=1182

            Bug ID: 1182
           Summary: 3D Convex Hull plugin uses all available memory and
                    processor but does not complete
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: nick.galati80 at gmail.com
                CC: nick.galati80 at gmail.com

When using the 3D Convex Hull plugin on a binary image stack with ~700 points,
the 3D Convex Hull plugin uses all of the processor and slowly consumes all
memory but it doesn't ever actually finish. 

I can run the same plugin in IJ1 with the same image and the convex hull is
created in ~20 seconds.

Information about your version of Java:

  os.arch => amd64
  os.name => Windows NT (unknown)
  os.version => 6.2
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to:
C:\Users\Nick\Desktop\FIJI~1.APP/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Users\Nick\Desktop\FIJI~1.APP

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20151026135651)
Fiji: http://update.fiji.sc/ (last check:20151028093859)
3D ImageJ Suite: http://sites.imagej.net/Tboudier/ (last check:20151008005610)

Files not up-to-date:
  8cb8d89b (LOCAL_ONLY) 20151102112105 plugins/quickhull3d.jar

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