Presentations

Revision as of 15:10, 21 October 2015 by Rueden (talk | contribs) (List the workshop presenter as simply "LOCI". Easier to read, and hopefully more future-proof.)

Talks

Date Presenter Title Resources
2015 ImageJ Conference
Keynotes
2015-Sep-03 Wayne Rasband Introduction to ImageJ

video

2015-Sep-03 Curtis Rueden ImageJ2 and Fiji: The ImageJ2 platform, and the Fiji distribution of ImageJ

video, slides

2015-Sep-04 Mark Tsuchida Microscope control and image acquisition with Micro-Manager

video

2015-Sep-04 Florian Jug Getting stuff done – Software synergy with ImageJ + KNIME

video

Featured presentations
2015-Sep-04 Pariksheet Nanda Sharing the value of software freedom with non-programmers

video, abstract, transcript

2015-Sep-04 Tiago Ferreira Alternative approaches for neuronal morphometry

video, abstract

2015-Sep-03 John Bogovic The Thin Plate Spline method for smooth non-rigid transformations

video, abstract, slides

Lightning talks
2015-Sep-04 Anne Alerding Quantifying soybean stem tissues using common tools in ImageJ & Fiji

video, abstract

2015-Sep-03 Fabrice de Chaumont Yet another ImageJ friend: Icy

video, abstract

2015-Sep-03 Jesus Manuel Falagan Plugins to import, visualize, process & write astronomical FITS files

video, abstract

2015-Sep-04 Bill Heeschen Quantitative characterization of cellular irregularities in extruded polystyrene foam using digital image processing and analysis

video, abstract, macro,
slides (PDF), slides (PPTX)

2015-Sep-03 Mark Hiner ImageJ+MATLAB: Reunited

video, abstract, slides

2015-Sep-04 Irene Landrum SWAMP – a no-cost, open, high-performance computing platform for continuous software assurance

video, abstract, slides

2015-Sep-03 Melissa Linkert OME Bio-Formats: 10 years of proprietary image data

video, abstract, slides

2015-Sep-03 Michael Majurski Accurate and scalable Microscopy Image Stitching Tool (MIST)

video, abstract

2015-Sep-04 Benjamin Nanes Slide Set: Simplified batch processing with ImageJ2

video, abstract

2015-Sep-04 Brian Northan Flexible Deconvolution using ImageJ Ops

video, abstract, slides

2015-Sep-04 Stephan Saalfeld Seamless stitching without blending

video, abstract

2015-Sep-04 Raghavender Sahdev TimeLapseReg – An ImageJ plugin for drift correction of video sequence in time-lapse microscopy

video, abstract

2015-Sep-04 Benjamin Schmid Real-time multi-view deconvolution of time-lapse data on the GPU

video, abstract

2015-Sep-04 Amitabh Verma Acquisition, processing & re-processing using OpenPolScope plugin for Micro-Manager

video, abstract

2015-Sep-04 Thorsten Wagner NanoTrackJ – An open-source multi-modal size characterization tool for nanoparticle tracking analysis based on ImageJ

video, abstract, slides

2015-Sep-04 Petr Walczysko The Open Microscopy Environment (OME)

video, abstract

2015-Sep-04 Jay Warrick JEX – a platform for data management and batch processing with standard tools

video, abstract

2015-Sep-03 Aryeh Weiss Automated processing of telomeres with ImageJ and R

video, abstract, slides

2012 ImageJ Conference
2012-Oct-24 Curtis Rueden ImageJ2: Current Status and Future Directions

slides

Bioimage analysis workshop - ISBI 2012
2012-Apr-30 Curtis Rueden ImageJ2 – ImageJ for the Next Generation of Biological Image Data

slides, abstract

2010 ImageJ Conference
2010-Oct-27 Curtis Rueden ImageJDev: Next Generation ImageJ

slides

Other presentations
2015-Jan-12 Johannes Schindelin The ImageJ Ops Framework: Image processing made easy

slides

Workshops

Date Presenter Title Resources
2015 ImageJ Conference
2015-Sep-03 Aryeh Weiss An introduction to digital image processing

video, abstract, slides, data

2015-Sep-03 Jan Brocher Image processing, feature extraction and analysis using the BioVoxxel Toolbox

video, abstract, slides

2015-Sep-03 Tiago Ferreira Scripting with BAR

video, abstract

2015-Sep-03 Dominik Lindner
Petr Walczysko
The OMERO platform for management of microscopy data and beyond

video, abstract

2015-Sep-03 Fabrice de Chaumont
Stephane Dallongeville
Hands on Icy !

video, abstract

2015-Sep-03 Matt McCormick SimpleITK

video, abstract, interactive

2015-Sep-04 Curtis Rueden
Brian Northan
ImageJ2 scripts: Parameters + ImageJ Ops

video 1, video 2, abstract, slides

2015-Sep-04 Marcel Austenfeld Statistical image analysis and reproducible reports with ImageJ and R

video, abstract

Other presentations
- LOCI Intro to Fiji slides (PDF), slides (ODP)
- LOCI Segmentation in Fiji slides (PDF), slides (ODP)
- LOCI Macros in Fiji slides (PDF), slides (ODP)

Posters

Date Presenter Title Resources
2015 ImageJ Conference
2015-Sep-03 Ignacio Arganda-Carreras Trainable Weka Segmentation: a tool for machine-learning-based image segmentation

abstract, poster

2015-Sep-03 Jan Brocher The BioVoxxel Toolbox

abstract, poster

2015-Sep-03 Olaya Fernandez-Gayol Using the wrMTrck plugin to analyze the Morris Water maze in mice

abstract, poster

2015-Sep-03 David Logan The ImageJ-CellProfiler Interface

abstract, poster

2015-Sep-03 Tobias Pietzsch BigDataViewer—Visualization and Image Processing for Terabyte Data Sets

abstract, poster

2015-Sep-03 Stephan Saalfeld ImgLib2 for visualization and generic image processing

abstract, poster

2015-Sep-03 Raghavender Sahdev TimeLapseReg – An ImageJ plugin for drift correction of video sequence in time-lapse microscopy

abstract, poster

2015-Sep-03 Thorsten Wagner Tools and methods of the Biomedical Imaging Group for ImageJ: An Overview

abstract, poster