Page history Edit this page How do I edit this website?
Original MediaWiki page

SPIMage processing course

The content of this page has not been vetted since shifting away from MediaWiki. If you’d like to help, check out the how to help guide!

Practical course on SPIM image processing

Hardware requirements

The overview of hardware requirements for SPIMage processing can be found here.

Standalone

Cluster

Software requirements

Sample data

OpenSPIM

Lightsheet Z1

Course outline

Installation

Pre-processing

Multi-view registration - single time-point

Multi-view fusion - single time-point

Time lapse registration

Time lapse fusion

Big Data Viewer

3d rendering