Featured Fiji Projects

Fiji-icon.png Fiji Is Just ImageJ
Overview
Using Fiji
Featured Fiji Projects
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Developing Fiji
Building Fiji from source
Developing Fiji
Contribution requirements
Supported compilers

Fiji is home to quite a few nice ImageJ plugins! Here is a non-exhaustive list:

3D Viewer
  • Hardware-accelerated 3D volume and mesh visualization, and 3D registration of image stacks.
Transform
Image registration
Segmentation
Tracking
Analysis
ImgLib2
  • Generic and extensible n-dimensional image processing library for Java.
TrakEM2
  • Register/edit/analyze/segment/annotate/3D model terabytes of confocal and electron microscopy images.
The core of Fiji.