BoneJ is a plugin for bone image analysis in ImageJ. It provides free, open source tools for trabecular geometry and whole bone shape analysis.
BoneJ was designed to work with plain ImageJ 1.x.
BoneJ can be installed into Fiji, but you must use the Java-6 version of Fiji, not the current Java-8 version:
- Download the final Java-6 version of Fiji labeled “2017 May 30” from here.
- Unpack it somewhere beneath your home folder.
- Download and install
BoneJ_.jarinto that installation's
- Launch Fiji and run to trigger installation of the ▶ 3D Viewer.
- Restart Fiji.
For technical details about ImageJ and Fiji using Java 6 vs. Java 8, see the Java 8 page.
- Doube, M.; Kłosowski, M. M. & Arganda-Carreras, I. et al. (2010), "BoneJ: Free and extensible bone image analysis in ImageJ", Bone 47(6): 1076-1079, PMID 20817052, <http://www.sciencedirect.com/science/article/pii/S8756328210014419> (on Google Scholar).